Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00042 ATGGAATCGCCCGGGAAAGACCATCTCGTTGGAAGCGGTGAACCCAACGACGTTGGTAGAGCCTACGaacacgaacaacaacaacaacaccaTAACTCTCAACCTCTTACCGGCGATGGTGCTAGTCCTGGAAAGATATTTATAGGTGGTTTGGCGAGAGAAACTACCATTGCACAATTTATCAAGCATTTTGGTAAATATGGTGAGATTACCGATTCCGTCATCATGAAGGATAGGAAAACTGGGCAGCCTCGTGGATTCGGGTTTATTACTTATGCAGATCCCGTAGTGGTTGATAAAGTCATTGAAGAGGATCATATCATCAACGGAAAACAAGTTGAGATTAAGCGGACTATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATATTTGTAGGTGGTATTCCTTCAAATGTGACTGAAGATGAATTTAGAGATTTTTTCACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGGGACCACTCTACCAATCGTTCTCGTGGCTTTGGGTTTATCACCTTTGACACTGAGGAAGCTGTAGATGAACTTCTATCTATGGGGAACAAGATTGAGTTTGCTGGCACTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGGCAAACCCTCCACCTCCATCATCCAAGCGCTACAATGACTCAAGGTCTTCATATGGCAgtggtggtgggtatggagatgcttatgaaggatttggtggaagttttggtgttggtggtggtggtggtTACAGTAGGTCCAGCAGTGTCTATGGTGGTAGGGGAGGTCCATATGGTGGCTATGGAAGTGAATTTGCTGGATATGGGGGATATGCAGGAGCAATGGGGGGACCTTACAGAGGCGATCCTTCCATGGGCTATGCAGGTCGTTATGGTGGAAGCTTTAGCAGAGGCTATGATCTTAGTGGCTATGGGGGACCTGGTGAAAGTTATGGGGCATAtggtggtgctggagctggtgctgctgctggtggaggcggttcttcgggtgctggtgcATATCAAAGTGGCTATGATGCCAGCAGCCTTGGAGGTGGATATGGTGGATATGGTGGAGGAGCTAGTGGAGGCTCCTTTTATGGGAGCAGAGGAGGATACAGTGCTGCTGGTCGATATCATCCGTATGGAAGATAG 1167 0.4027 MESPGKDHLVGSGEPNDVGRAYEHEQQQQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPVVVDKVIEEDHIINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDTEEAVDELLSMGNKIEFAGTQVEIKKAEPKKANPPPPSSKRYNDSRSSYGSGGGYGDAYEGFGGSFGVGGGGGYSRSSSVYGGRGGPYGGYGSEFAGYGGYAGAMGGPYRGDPSMGYAGRYGGSFSRGYDLSGYGGPGESYGAYGGAGAGAAAGGGGSSGAGAYQSGYDASSLGGGYGGYGGGASGGSFYGSRGGYSAAGRYHPYGR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00042 388 MobiDBLite consensus disorder prediction 206 230 - -
Car02g00042 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 108 IPR000504 GO:0003723
Car02g00042 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 203 IPR000504 GO:0003723
Car02g00042 388 MobiDBLite consensus disorder prediction 1 42 - -
Car02g00042 388 SUPERFAMILY RNA-binding domain, RBD 29 122 IPR035979 GO:0003676
Car02g00042 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 120 IPR000504 GO:0003723
Car02g00042 388 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 3 388 - -
Car02g00042 388 SUPERFAMILY RNA-binding domain, RBD 130 238 IPR035979 GO:0003676
Car02g00042 388 Gene3D - 17 128 IPR012677 -
Car02g00042 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Car02g00042 388 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 3 388 - -
Car02g00042 388 SMART rrm1_1 133 206 IPR000504 GO:0003723
Car02g00042 388 SMART rrm1_1 45 116 IPR000504 GO:0003723
Car02g00042 388 Gene3D - 132 215 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00042 Car-Chr2 420047 423161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00042 44 200 Eukaryotic Initiation Factors Gene Family AT1G71770 26.590 1.33e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00042 K12741 K14314 gmx:100793209 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00042 02 420047 423161 Car02g00042 02 420047 423161 ECH