Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00019 ATGATGAAACCAATATCACTAACCCACCACATATCATCCTTTCTCATACCTCattcatattccaattccagattcataatctcttccaaattccTCTATCAATTTTCAATCACAAAACCATTCCGATTTCTCTCAACAACTCCCTCCCCATACCCTCTCCAATACGAACTTATCATCAACCGTCCCGACCTCTCTAAACCCTCCTATCATCCTCCACCCGCCAAACCGAACCACTCTCCCGAACCAAACCAACCTGAAACCCTCCAAAATTGGGCCCAAACTAAGTTAACCTCCGAACCCGAATTAAACCAACCCGGTTCATCAAAACCCGAACTTGATAAAGCCATGAGGAAATACTACAATAAAAGGAGGAAGAGAATGTATGGGTCTGATTCCGATGACGATAATCGGAGAAACGATGAACAGTTTGTCGAGTTGAAACCTCAAGTTGTTGAATTTCCTACTTTGCATAAGAGAGAAGAGGAATTGTATTTTTATGATGCTTTTGCTTATCCTTGGGAGAAAGATAAACATTACAAAATGGTTTATCAGTTGGAGAAAAAGTTTTTCCCTGATCAGTGTTTAGATAAGGCTTTTCTTCAACCTGGTCAAtcaaattcaaattcaaattcaaattcaaatGTTAGGAATAAGAAAGTTGGCGCTTTtggtgttggtggtggtggtggAGAGAATAATAATAATAACAATGATGAAGTTGGTGTTTGTGAGAAAAAGTTGGTGTTTTTTGaggagaatgggaaaggggaagaaaagggtatgggtaagAAGGATGGTGGTTGTAAAGAACTTAATAGTGAGAAGAAGGTGGGAGATTTTTTTAAAGGTTTGAAGAAGGATGTTGAAGTTGTAGAGCCGTTTTTTTCTTCAAGGAGGACTGGTCTTCCGCCTGTTTGGGATAGTCAATATGGTACTGTGCTTTTGGTTAACAAACCTAAAGGTTGGACTTCATTTACAGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGCCATGCTGGAACCCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAATCTACAAAACTGGTGGATAGATATCAAGGAATGGTTAAGGGTTATAGTGGAGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAACGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAGTGCCTTGTCCTTTTGTGGAGAGATTTGGCAAGTTCCTCCTATGTTCTCTGCTATTAAAGTTGGAGGTGAAAAATTGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATTTCAATTTTCCAATTCGACGTAGAGCGTAGCTTGGACGACAGACAAAATTTGATTTTTAGAGTGACTTGTTCTAAAGGGACATATATTCGGTCACTCTGTGCAGATTTTGGGAAGGCTCTTGGCAGCTGCGCACATTTAACGGCTCTCCGAAGAGATTCAATCGGACAATATTTAGCTGATGATGCATGGGACTTTCAAGACCTGGAAGAGACTATCACCAAAACTTATCTTTAA 1593 0.3729 MMKPISLTHHISSFLIPHSYSNSRFIISSKFLYQFSITKPFRFLSTTPSPYPLQYELIINRPDLSKPSYHPPPAKPNHSPEPNQPETLQNWAQTKLTSEPELNQPGSSKPELDKAMRKYYNKRRKRMYGSDSDDDNRRNDEQFVELKPQVVEFPTLHKREEELYFYDAFAYPWEKDKHYKMVYQLEKKFFPDQCLDKAFLQPGQSNSNSNSNSNVRNKKVGAFGVGGGGGENNNNNNDEVGVCEKKLVFFEENGKGEEKGMGKKDGGCKELNSEKKVGDFFKGLKKDVEVVEPFFSSRRTGLPPVWDSQYGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKSTKLVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKSALSFCGEIWQVPPMFSAIKVGGEKLYEKARRGESIELSPRRISIFQFDVERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYLADDAWDFQDLEETITKTYL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00019 530 Gene3D Pseudouridine synthase 306 529 - -
Car02g00019 530 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 286 528 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car02g00019 530 Pfam TruB family pseudouridylate synthase (N terminal domain) 332 482 IPR002501 GO:0006396
Car02g00019 530 TIGRFAM TruB: tRNA pseudouridine(55) synthase 312 521 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car02g00019 530 MobiDBLite consensus disorder prediction 201 218 - -
Car02g00019 530 MobiDBLite consensus disorder prediction 64 86 - -
Car02g00019 530 Hamap tRNA pseudouridine synthase B [truB]. 310 529 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car02g00019 530 SUPERFAMILY Pseudouridine synthase 311 525 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car02g00019 530 CDD PseudoU_synth_EcTruB 313 523 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car02g00019 530 Pfam tRNA pseudouridylate synthase B C-terminal domain 483 525 IPR032819 -
Car02g00019 530 MobiDBLite consensus disorder prediction 66 80 - -
Car02g00019 530 MobiDBLite consensus disorder prediction 201 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00019 Car-Chr2 229967 236013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00019 309 504 NAC Transcription Factor Family AT3G57150 33.163 2.10e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00019 K03177 - gmx:100793939 657.136