LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car02g00005	ATGGTCAAGGCAGGGTTTGCTGGAGATGATGCTCCGCGTGCCGTGTTTCCCAGCATTGTAGGACGTCCTCGTCATACTGGTGTTATGGTTGGTATGGGACAAAAAGATGCATATGTTGGTGACGAGGCACAATCTAAACGTGGTATCCTCACTCTCAAGTACCCAATTGAGCATGGTATTGTTAGCAATTGGGATGACATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTGGCCCCTGAAGAGCATCCAGTTCTCTTAACAGAGGCTCCTCTTAACCCCAAAGCTAACCGTGAGAAGATGACCCAAATCATGTTTGAGACTTTTAATGCCCCTGCTATGTATGTAGCCATTCAGGCTGTTCTTTCACTCTATGCCAGTGGTCGTACAACCGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCATACAGTCCCTATCTATGAGGGTTATGCCCTCCCACACGCCATCCTTCGTCTTGATTTGGCCGGTCGTGACCTGACTGATTTCTTAATGAAGATTCTGACAGAACGTGGGTATTCTTTTACCACCTCAGCAGAGCGTGAAATTGTGAGGGACATGAAGGAGAAGTTGGCGTACATTGCCCTTGATTATGAGCAAGAACTAGAGACATCCAAGACCAGCTCTGCAGTGGAGAAGAGTTATGAGTTACCTGATGGGCAAGTCATCACTATTGGTGCTGAGCGTTTTAGGTGTCCAGAGGTCTTGTACCAACCGTCCATGGTTGGAATGGAAGCTGCAGGAATTCACGAGACCACATACAACTCCATAATGAAATGTGATGTTGACATCAGGAAAGACCTGTACGGTAACATTGTCCTTTCAGGAGGTACAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAAATTTCTGCATTGGCCCCAAGCAGCATGAAGATCAAGGTGGTAGCACCCCCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCTTCCCTGAGCACCTTCCAACAGATGTGGATTGCAAAGGCTGAGTATGATGAGTCTGGACCATCAATTGTGCATAGGAAGTGTTTCTAA	1083	0.4672	MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLYQPSMVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF	360

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car02g00005	360	Gene3D	-	123	323	-	-
	Car02g00005	360	SMART	actin_3	1	360	IPR004000	-
	Car02g00005	360	Pfam	Actin	2	360	IPR004000	-
	Car02g00005	360	Gene3D	Actin; Chain A, domain 4	165	256	-	-
	Car02g00005	360	SUPERFAMILY	Actin-like ATPase domain	132	360	IPR043129	-
	Car02g00005	360	PANTHER	ACTIN-97	1	359	-	-
	Car02g00005	360	SUPERFAMILY	Actin-like ATPase domain	2	138	IPR043129	-
	Car02g00005	360	ProSitePatterns	Actins signature 1.	38	48	IPR004001	-
	Car02g00005	360	ProSitePatterns	Actins signature 2.	341	349	IPR004001	-
	Car02g00005	360	PRINTS	Actin signature	34	45	IPR004000	-
	Car02g00005	360	PRINTS	Actin signature	100	113	IPR004000	-
	Car02g00005	360	PRINTS	Actin signature	221	237	IPR004000	-
	Car02g00005	360	PRINTS	Actin signature	11	20	IPR004000	-
	Car02g00005	360	PRINTS	Actin signature	125	144	IPR004000	-
	Car02g00005	360	PRINTS	Actin signature	46	68	IPR004000	-
	Car02g00005	360	CDD	NBD_sugar-kinase_HSP70_actin	59	166	-	-
	Car02g00005	360	ProSitePatterns	Actins and actin-related proteins signature.	89	101	IPR020902	-
	Car02g00005	360	Gene3D	-	1	354	-	-
	Car02g00005	360	PANTHER	ACTIN	1	359	IPR004000	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car02g00005	Car-Chr2	103115	104600	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car02g00005	1	360	Cytoskeleton Gene Families	AT3G12110	96.944	0.0	732

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car02g00005	K10355		-	gmx:100798523	719.924