Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02933 ATGCTAATGGGCGCGCGCTCTAATTCAATTGTGCGCGTACCTGCAGCATATAATTATAATGTCAAATCCTTAGTTGTTTGGATATTATTACTTTCATGTGCAAGCATGTCAATGTCATATTCAGATGTTGAGGCGTTGTTGAAGTTCAAGGATTCATTAACAAATGTGGTGGCCCTGAGTAATTGGAATCCATCCATAAACTCAAAACCACCTTGCTCTGGAAACATTCCTAATTGGGCGGGCTTGCTTTGCTTGAATGACAGGGTGTGGGGGTTACGCCTTGAGAGCATGGGGTTAACCGGAAATATCGATCTGGGATCTCTTGCTTCAATGCCGGCATTGCGGACACTTAGCCTAATGAACAATACCTTTGTGGGTTCCTTACCCAACATCAATATGTTGCCCAGTTTGAGGGCCCTCTACTTGTCCTATAATCATTTCTCGGGGCAGATACCCGACGATGCATTTGTAGGTATGCGCAGGTTGAGGAAAGCGTATTTGGCCAATAACGAGTTCACCGGTAAAATTCCTTCCTCTCTTGCTACCTTGCCTACTCTCCTCGTCCTCAGGCTTGACGCAAACAAGTTTGAAGGTCAAATCCCCGATTTTCAACAGaagaataacaataataataaattgaagataataaACTTGTCTAACAATGATTTAGAGGGTCCCATCCCGCTCAATCTAAGAACCTTCGGTGCCTCTTCTTTTAGCGGAAATGTGCGTCTATGCGGGCCGCCTTTAACGAATAAGTGTCAATTAGGTGGGGAGAGTAAAATGCTCGTCATGAAAATTTTACTTACTGTGATCATGATAGCATTTATACTAGCCATTGTGATTTCAATATTGGTCATCTCCCGCTTGAGGTCTCAAAAGCAGCTAGATAAAGTCTCTTCTGCAACCTCAACAACGTTCCATGTGCAGACCTCCAATAAATATGTTAATCCACCTGTTTATGTGAAAACCAAAAGCCTCGCTGAACACTATGATCCTCGAAGTCCTAAGCAGGATCGTCATCATTCCAAGAGAGGAGAACAAGGAAAACTTATATTCCTCAGACAGGATGGGCTCAAGTTTGATTTACAGGATTTGCTAACGGCGTCTGCTGAAATTCTAGGTAGTGCCTCATTTGGGTCTTCCTACAAGGCTGTGATTTTGGATGGTCGGGCTGTGGTTGTCAAGAGGTACAAGCAGATGAACAATGTGCCAAGAGAAGAGTTCCATGAGCACATGAGAAGGATGGGAAACCTCGACCATCCCAATGTTCTACCTCTCCTCTCCTATTATTATAGAAGAGAAGAGAAGCTTTTGATATCTGCCTTTGTTCACAATGGTTGCTTGGCCAGTCATCTTCATGGTAACCACAACTATCAGAAGCCAGGACTTGATTGGCCAACCCGTTTGAAAATTGTGAAAGGTGTAGCTAGGGGTTTGGCTTATCTATACAGTGCACTCCCTAATGTGATTGTGCCTCATGGTCATCTTAAATCTTCCAATGTGCTTTTAGATGAATCCTTTGAGCCCCTACTAACTGATTATGCCCTCAGTCCTTTGATCAATCTTGACCATGCCCAAAAAATCATCATGCCTTACAAATCCCCTGAGTATGCTCAACTTGGCCGCATTACAAAGAAAACCGATGTCTGGAGTTTTGGGATTCTAATATTGGAGATCCTAACGGGTAAATTCCCAGAGAACTATATCACAAATAGACATAATAGTGATTCTGATGTAGCTAGTTGGGTAAATGCAATGATTACCGAGAAGCGCACAAGTGATGTATTTGACATAGAGATGGGAGGAGTAGGAAGTAGTAAGGCTGAATTGCTCAAACTCTTAAAGATTGGCCTCAGTTGTTGTGAGGAGAATGTGGAAAGAAGGTTGGACATCAAAGAGGCTCTCGAGCAGATTGAAGACTTGAAAGAGGGTGTAATTGATACTGTACTTGGAGAATACTCTGCGTCTCTTATCACCCCCGAAAGGGATGCTTATAGAGCTGTGTGA 2010 0.4269 MLMGARSNSIVRVPAAYNYNVKSLVVWILLLSCASMSMSYSDVEALLKFKDSLTNVVALSNWNPSINSKPPCSGNIPNWAGLLCLNDRVWGLRLESMGLTGNIDLGSLASMPALRTLSLMNNTFVGSLPNINMLPSLRALYLSYNHFSGQIPDDAFVGMRRLRKAYLANNEFTGKIPSSLATLPTLLVLRLDANKFEGQIPDFQQKNNNNNKLKIINLSNNDLEGPIPLNLRTFGASSFSGNVRLCGPPLTNKCQLGGESKMLVMKILLTVIMIAFILAIVISILVISRLRSQKQLDKVSSATSTTFHVQTSNKYVNPPVYVKTKSLAEHYDPRSPKQDRHHSKRGEQGKLIFLRQDGLKFDLQDLLTASAEILGSASFGSSYKAVILDGRAVVVKRYKQMNNVPREEFHEHMRRMGNLDHPNVLPLLSYYYRREEKLLISAFVHNGCLASHLHGNHNYQKPGLDWPTRLKIVKGVARGLAYLYSALPNVIVPHGHLKSSNVLLDESFEPLLTDYALSPLINLDHAQKIIMPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYITNRHNSDSDVASWVNAMITEKRTSDVFDIEMGGVGSSKAELLKLLKIGLSCCEENVERRLDIKEALEQIEDLKEGVIDTVLGEYSASLITPERDAYRAV 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02933 669 ProSiteProfiles Protein kinase domain profile. 368 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02933 669 Pfam Protein tyrosine and serine/threonine kinase 372 573 IPR001245 GO:0004672|GO:0006468
Car01g02933 669 Gene3D Phosphorylase Kinase; domain 1 335 443 - -
Car01g02933 669 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 22 650 - -
Car01g02933 669 Gene3D Ribonuclease Inhibitor 208 256 IPR032675 -
Car01g02933 669 SUPERFAMILY Protein kinase-like (PK-like) 372 641 IPR011009 -
Car01g02933 669 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 650 - -
Car01g02933 669 Pfam Leucine rich repeat 135 196 IPR001611 GO:0005515
Car01g02933 669 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Car01g02933 669 Gene3D Transferase(Phosphotransferase) domain 1 444 648 - -
Car01g02933 669 Gene3D Ribonuclease Inhibitor 39 207 IPR032675 -
Car01g02933 669 Pfam Leucine rich repeat N-terminal domain 41 84 IPR013210 -
Car01g02933 669 SUPERFAMILY L domain-like 69 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02933 Car-Chr1 54283604 54287578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02933 21 642 Receptor kinase-like Gene Family AT4G31250 44.822 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Car01g02933 PK_Tyr_Ser-Thr 1.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02933 - - pvu:PHAVU_005G185800g 948.347