Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02925 ATGGACACTGATTTCGACGAGGAGACTCCTTTCAGTACTACACCCTCTGCTGCTATTGCTGCTTCATCATCTTCTTCTTCTAAACATCACACTTTTAATTTCGAAACTGCAGTTAATTTGCCCAAATTCAACCATTCACGAACAAGACGAATCAGCAAGAGTATATATATTGTCTTAATCAAAGCAAAGATTAACTTGTTGCTACCATTTGGTCCCTTGGCCATCTTCCTACATTATACTACCACCGCAAAGCATGTATGGGTCTTCTTCTTCGCCTTATTGGGTATCGCTCCTTTGGCCGAACGTCTAGGTTATGCTACCGAACAGCTTGCCTTCTACACTGGACCAACAGTTGGGGGTTTGCTTAATGCCACGTTTGGCAATGCAACTGAAATGATTATATCTATTTATGCATTGAAAAGTGATATGATTAGGGTTGTTCAGCAATCTTTACTTGGTTCAATCTTGTCAAATATGCTTCTAGTTCTAGGATGTGCATTCTTTACTGGTGGGATTGTCCACTACAAAAAACTTCAGGTTTTCAATAAGGCAGCTGCTGTTGTCAATTCGGGGTTGCTGTTGATGGCTGTAATGGGAATACTATTTCCTGCTGTGCTTCACTTTACTCACTCAGAGGTTCATCTTGGGAAGTCGGTCTTATCTCTATCAAGATTTAGCAGCTGTATAATGCTACTGGCCTATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCAACAGAATTTTTATAGTCCAGTTGATCAGGAAGGAGATACAAGTGAAAATTCTGACGAGGAGGAAGAACTTGAATTATCTCAATGTGAAGCGATAATCTGGCTTGCTATTTTGACAGCATGGGTATCGGTATTGTCTGGATATCTTGTGGATGCCATAGAGGGAGCATCTGAATCGTTGAATATGTCAGTGGCTTTTATTAGTGTCATCTTGCTTCCAATAGTAGGGAATGCTGCAGAGCACGCAAGTGCTATCATGTTTGCCGTAAAGGACAAGCTAGATATCACAATTGGAGTTGCAGTTGGATCATCAACACAGATATCTATGTTTGTGATCCCTTTCTGCGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTCGAGACTGCCACACTTTTTATCACTGTGCTGGTAGTTGCATTTATGATGCAGGAAGGAACCTCAAATTATTTTAAAGGCTTGATGCTTATTCTATGCTATCTTATAGTTGCTGCCAGTTTTTTCGTACATGTAGACCCAAAAAGTGGTGATGACTAA 1287 0.404 MDTDFDEETPFSTTPSAAIAASSSSSSKHHTFNFETAVNLPKFNHSRTRRISKSIYIVLIKAKINLLLPFGPLAIFLHYTTTAKHVWVFFFALLGIAPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSDMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHYKKLQVFNKAAAVVNSGLLLMAVMGILFPAVLHFTHSEVHLGKSVLSLSRFSSCIMLLAYASYLFFQLRSQQNFYSPVDQEGDTSENSDEEEELELSQCEAIIWLAILTAWVSVLSGYLVDAIEGASESLNMSVAFISVILLPIVGNAAEHASAIMFAVKDKLDITIGVAVGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKSGDD 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02925 428 Gene3D - 116 260 IPR044880 -
Car01g02925 428 Gene3D - 262 419 IPR044880 -
Car01g02925 428 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 2 425 IPR004713 GO:0006812|GO:0008324|GO:0016021
Car01g02925 428 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 425 - -
Car01g02925 428 TIGRFAM caca2: calcium/proton exchanger 57 418 - -
Car01g02925 428 Pfam Sodium/calcium exchanger protein 276 415 IPR004837 GO:0016021|GO:0055085
Car01g02925 428 Pfam Sodium/calcium exchanger protein 85 242 IPR004837 GO:0016021|GO:0055085
Car01g02925 428 TIGRFAM cax: calcium/proton exchanger 67 418 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02925 Car-Chr1 54192191 54198351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02925 5 423 Antiporters AT3G13320 69.668 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02925 K07300 - gmx:100806000 672.159