Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02918 ATGAATGGAGTTCAAATACCAACAGTGAGGGAACTGAACAACAATGTTGAAACAAATGAACAAACGAAGAAGATGATGAATGTGAAACCCCTGAGCGAGATCGATGGCAAAGGCGAGGTGAGGCATAGCCGTAGCTGCAGCAACAGTCATGGTTCTGACAACAAGGAAAACGCCAATGTGAACAACGTCGTATTTCCAAAGTCATTGTCATTGTCCAACAAGATTGTTAAGCCGTCGTCGCTACAGTTGTGTATGCAAATAAACGATTCTTCAAACTCTTCAAATATTTGGGACCACTCTGACTCCGACGCAGCTCCTGCTTCCTCCTGGTCCACTTTGCCCAACAAATCTTTGATGTGTAGACCCTTGCCTATAGATATAGGAAGATGTACATGTGTTATTGTGAAGGAACCAACACCACAGGGACTATCTGGGGGAACTTTCTTCTCTCTTTATACCTATGAAGGTCATGGACGACAGAATAGGAAACTGGGTGTAGCACACCACAAGAGGCGGAGTGGGAAGTCTCAGTTCACCATAGCTCAGAATGTAAAAGGACTAGTTTCCATTTCAGATGATACTTTCCTTGGGACAGTAACTGCTAACCTCACCGGTTCTAAATACCATATTTGGGATCAGGGATGTCGAAGCCGTAGTAAACAACCAAATCCGCCTCTTGCTGTTGTTGAGTATGTACCTACAATACCAACATGTACAGGAACTCACAGAAGCATCAAAGCATATATACCCAACCATCAATCTATGTCTTTCAAGAACACCACCCAGGTACAGCATATTAAGGGACTGCCAATGAATTGGGAGGGTAAATTGGACAAAGTACATCAACTATTCTCAAGGGTTCCATTTTACAACAAGAGTACAAAGCAATTTGAGCTCGACTTTAGAGATAAAGGAAGGGTAGGACTTGGAATCCAGAGATCGGTAAAAAACTTTCAGCTTACTTTAGAGGAGGATGGGAAGCAGACAATCCTGCAGCTAGGGAGGGTGGGAAAATCAATGTTTGTTATGGACTACAGATATCCTTTGACTGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCGTTGATGCAAAGCTTTGTTGCATAGTCTAG 1113 0.4313 MNGVQIPTVRELNNNVETNEQTKKMMNVKPLSEIDGKGEVRHSRSCSNSHGSDNKENANVNNVVFPKSLSLSNKIVKPSSLQLCMQINDSSNSSNIWDHSDSDAAPASSWSTLPNKSLMCRPLPIDIGRCTCVIVKEPTPQGLSGGTFFSLYTYEGHGRQNRKLGVAHHKRRSGKSQFTIAQNVKGLVSISDDTFLGTVTANLTGSKYHIWDQGCRSRSKQPNPPLAVVEYVPTIPTCTGTHRSIKAYIPNHQSMSFKNTTQVQHIKGLPMNWEGKLDKVHQLFSRVPFYNKSTKQFELDFRDKGRVGLGIQRSVKNFQLTLEEDGKQTILQLGRVGKSMFVMDYRYPLTGYQAFCICLASVDAKLCCIV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02918 370 MobiDBLite consensus disorder prediction 34 49 - -
Car01g02918 370 Gene3D Tubby Protein; Chain A 111 369 IPR025659 -
Car01g02918 370 PANTHER TUBBY-RELATED 17 368 - -
Car01g02918 370 PRINTS Tubby superfamily signature 195 219 IPR000007 -
Car01g02918 370 PRINTS Tubby superfamily signature 306 322 IPR000007 -
Car01g02918 370 PRINTS Tubby superfamily signature 326 345 IPR000007 -
Car01g02918 370 PRINTS Tubby superfamily signature 347 369 IPR000007 -
Car01g02918 370 MobiDBLite consensus disorder prediction 33 59 - -
Car01g02918 370 PANTHER TUBBY-LIKE PROTEIN 8 17 368 - -
Car01g02918 370 Pfam Tub family 120 363 IPR000007 -
Car01g02918 370 SUPERFAMILY Tubby C-terminal domain-like 107 368 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02918 Car-Chr1 54154282 54156498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02918 76 263 TUB Transcription Factor Family AT1G16070 52.885 4.16e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Car01g02918 Tub 5.1e-40 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02918 K19600 - gmx:100803500 457.988