Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02908 acgactcttccagagaaatttgttctggattttgtaccagtcattggagcatGTTTTTCAGTTTGTGAAATAATTTTTCTGCTGAAGAAAGAACAAGATGGCCACTTTGTTGAATATCATAAGTTGTTCTGTAGCTGTTCTGAGTTGTTGGTGTGGGCAAATATCATTCTCTTCACAAAGTGTGCAAGCAGTCATTGCATAGTCTTCAACCGTGTCTTATGTTTCTGGTGGATTCTGAAACCAATATTGGGAATTTTCCATTTGATAACAAAGTTTCCATCATTGGAGGTTTCAGTATGCATCATTGAAACTTTAGTTGTTCTCTCGAATATCTCATTTGGCATAGTTATCAATGTGATCAGGATAAAGAGATTATCTTCCAAAAGCAGTTTATTGGAAGATCCACTTCTTGCCAATGGAGGGGACCTTGAGGAAGGTGGAAATCATGATTTTGTAAATAATGGAAACTTTTGGGATTTGATGACTTTCAAATTCATAAGTCCAGTAATGAATCAGGGTGTGCTAAAGCAATTAGACTCTGAAGATCTGCTGCCGCTACTACCTGATATGGGTCCTTCTTTCTGTCATGATATAATATTGTCCAATTGGCGAGCTCAATTGAGTAATAATGGCTCTAACCCTTCCTTGCTTAGAGCACTCTGTAGTGCATATGGATGGCCATATCTCTGCCTTGGTTTATTGAAGGTGATAAATGATTGTATTGGTTTTGCGGGACCGTTGCTTCTCAATAAGCTGATCAAGTTTCTTCAACAAGGTTCAGCAAGTTGGGATGGGTATTTACTGGCActatccttgggtctgacatcaataatgaaATCCTTTCTAGATACACAGTATACTTTTCGTCTTTCCAAACTGAAGCTAAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCTATATGTAAACCTAGCAGAGCGTTCAAAATTCACAAATGGAGAAATTCAGACATTCATGTCAGTGGATGCTGACCGAACTGTCAACTTGTGTAATAGTTTGCATGATGTGTGGAGCCTGCCTTTACAAATTGGTGTCGCACTTTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTTTCTGGATTAGCGATAACCATTTTACTGATACCAGTGAATAAATGGATATCAACATTGATTGCCAGTGCCACTGAGCAAATGATGAAGGAGAAGGATGAAAGGATTCGTAGGACCGGAGAACTTTTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAGCTTCTTTTTTCTAGTTGGTTGATGGAGACAAGATCTTTGGAAGTGAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACACCATCACTCTTTTCTCTTTCCACATTTGGACTCTTTGCATTGATGGGACATCAACTTGATGCTGCAACGGTTTTCACTTGTCTTGCTTTGTTTAACACCCTGATATCACCACTTAATTCATTCCCTTGGGTGATTAATGGATTGATTGACGCTATCATATCCTCGAGACGGTTGAGTAGGTTTCTCTCTTGCCCTGAACATAGATTCAAAGTGGGAGAGAGCAGTTCCTGTTCATCATCATTCCTGAGTAAACAGCCTGATTCTTTACAAGATTTGGCGGTCTTTATCCAAGATGCATGCTGTTCCTGGTCAAGCAGGGATGAACAAGCATTAAATCTGGTGTTGAATCATATAACTCTAAGCCTGTCACAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCCGGTAAATCATCCCTGTTGTATTCGATTCTCGGAGAAATGCGGCTTGATCATGGATCTATTTATTGCAATGGATCTGTAGCTTATGTACCACAGGTCCCTTGGATTATATCTGGAACAGTACGTGACAATATATTATTTGGGAAAAGCTATCATCCTGAAAGCAGATATGCAGATACAGTAAAGGCATGTGCGTTAGATGTTGATATCTCATTGATGGTTGGTGGAGACATGGCTTATGTTGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGTACTGTATCACGACTCAGATGTTATTATGCTTGATGACGTCCTAAGTGCAGTTGATGTACAAGTTTCTCAGTGGATCTTACACAATGCCATTCTTGGTCCTCTTACGCAGGGGAAAACTCGATTGCTCTGTACCCACAATATTCAGGCAACATCTTCTGCTGATATGATTGTTGTATTGGACAAAGGACATGTAAAGTGGATGGGAAGTTCAGAAGACTTTCCAATATCCTCATATTCAGCATCTACCCCGTTGAATGAAATGGATTCAAATTCACATAATCATCGGCAATCTTGCAGCACACATTCTTCTATATCCAAGGAGCAGTCTCTTCCTGATAGAATTAGCACGCATGCTCTTGAGGGAGCAGAGGATGTAATTGAAGTTGAGTTGAGAAAAGAGGGAAAAGTTGAACTTGGAGTGTATAAGAACTATGCTGCTTTTACTGGCTGGTTCATTGCCGTTGTTATATGTCTATCAGCTATTCTGATGCAAGCTTCACGTAATGGAAATGATTTATGGTTGTCATATTGGGTTGATACCACAACAGAATACGGTCAAACAAGTTACTCTATGTCTTTCTATCTGGCTATACTATGTCTCTTTTGTGTTATGAATTCCCTTTTCACTTTGGTGAGGGCATTCTCTTTTGCATTTGGTGGCTTAAAAGCGGCAACTAAGGTACACAATAGACTGCTCAGCAAGCTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCAGGCCTGTTGGGTATTGCAATTATTTTGTCTTACGTACAGGTCTTCTTCTTAGTTCTGTTATTGCCATTTTGGTATATCTACAGTAGGCTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTACGAAGACTGGATAGTGTTTCTCGTTCTCCAATATATACATCTTTCACAGAAACACTTGATGGATCCTCAACTATTAGGGCCTTTAAATCCGAGGGTTTTTTCTTTGCCAAATTTATTGAGTACGTTACATTATATCAGAAGACTTCCTATACAGAGATAGTGGCGAGTCTGTGGCTTTCCTTGCGTCTTCAGTTATTAGCTGCATTTATCATCTCATTCATAGCCCTGATGGCTGTTGTCGGATCTCATGGAAGTCTTCCTATCAACTTTGGTACCCCTGGACTGGTTGGATTGGCACTCTCGTACGCTGCTCCAATTGTGTCTCTGCTTGGGAGTTTTCTAACAAGTTTCACTGAAACAGAAAAGGAAATGGTTTCGGTCGAAAGAGCCCTTCAATACATGGATATTCCTCAAGAAGAACAAGCTGGATGTTTACACTTGAATCCAGATTGGCCACATCAAGGAGTTATTGAATTCCAACATGTTACTTTGAAATATATGCCATCTTTACCACCTGCACTCTGCAATCTTAGTTTTAAAATTGAAGGAGGGGCACAGGTAGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATGCCCTTTTCCGTCTTACCCCAATATGTGCAGGCTCCATCACAGTTGATGGCATGGACATCCAAAACATTCCTGTGAGGGAACTACGCACACATTTGGCTATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGACCACTAAGGGATAACTTAGATCCGTTCAAAATGAATGATGACTTAAAAATTTGGGATGCACTGGAGAAGTGTCATGTGAAAGAGGAAGTAGAAGTAGCTGGAGGGCTGGATATTCTTGTAAAGGAAGGGGGGATGTCTTTTTCAGTTGGTCAGCGGCAGCTTCTATGCCTTGCACGTGCACTTCTTAAATCTTCAAAGGTTCTTTGTTTAGATGAATGCACTGCCAGTGTAGACATTCAAACTGCTTCGCTGCTGCAAAGCACCATATCAAGTGAATGCAAAGGAATGACCGTGGTCACAATTGCTCACCGGATTTCAACTATCATAAATATGGATAACATTCTAATTCTCGACCACGGGAACCTGGCTGAACAAGGAAATCCGCAGATTCTTCTGGAAGATGGCACCTCTATATTTTCTAGTTTTGTTAAAGCTTCATCCTTGTAA 4134 0.3962 TTLPEKFVLDFVPVIGACFSVCEIIFLLKKEQDGHFVEYHKLFCSCSELLVWANIILFTKCASSHCIVFNRVLCFWWILKPILGIFHLITKFPSLEVSVCIIETLVVLSNISFGIVINVIRIKRLSSKSSLLEDPLLANGGDLEEGGNHDFVNNGNFWDLMTFKFISPVMNQGVLKQLDSEDLLPLLPDMGPSFCHDIILSNWRAQLSNNGSNPSLLRALCSAYGWPYLCLGLLKVINDCIGFAGPLLLNKLIKFLQQGSASWDGYLLALSLGLTSIMKSFLDTQYTFRLSKLKLKLRSSIMTLIYEKCLYVNLAERSKFTNGEIQTFMSVDADRTVNLCNSLHDVWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISTLIASATEQMMKEKDERIRRTGELLTYIRTLKMYGWELLFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPSLFSLSTFGLFALMGHQLDAATVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHRFKVGESSSCSSSFLSKQPDSLQDLAVFIQDACCSWSSRDEQALNLVLNHITLSLSQGSFVAVIGEVGSGKSSLLYSILGEMRLDHGSIYCNGSVAYVPQVPWIISGTVRDNILFGKSYHPESRYADTVKACALDVDISLMVGGDMAYVGEKGVNLSGGQRARLALARVLYHDSDVIMLDDVLSAVDVQVSQWILHNAILGPLTQGKTRLLCTHNIQATSSADMIVVLDKGHVKWMGSSEDFPISSYSASTPLNEMDSNSHNHRQSCSTHSSISKEQSLPDRISTHALEGAEDVIEVELRKEGKVELGVYKNYAAFTGWFIAVVICLSAILMQASRNGNDLWLSYWVDTTTEYGQTSYSMSFYLAILCLFCVMNSLFTLVRAFSFAFGGLKAATKVHNRLLSKLINAPVQFFDQTPGLLGIAIILSYVQVFFLVLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEGFFFAKFIEYVTLYQKTSYTEIVASLWLSLRLQLLAAFIISFIALMAVVGSHGSLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERALQYMDIPQEEQAGCLHLNPDWPHQGVIEFQHVTLKYMPSLPPALCNLSFKIEGGAQVVGIIGRTGAGKSSVLNALFRLTPICAGSITVDGMDIQNIPVRELRTHLAIVPQSPFLFEGPLRDNLDPFKMNDDLKIWDALEKCHVKEEVEVAGGLDILVKEGGMSFSVGQRQLLCLARALLKSSKVLCLDECTASVDIQTASLLQSTISSECKGMTVVTIAHRISTIINMDNILILDHGNLAEQGNPQILLEDGTSIFSSFVKASSL 1377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02908 1377 SUPERFAMILY ABC transporter transmembrane region 844 1121 IPR036640 GO:0005524|GO:0016021
Car01g02908 1377 CDD ABCC_MRP_domain2 1137 1357 - -
Car01g02908 1377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 766 IPR027417 -
Car01g02908 1377 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1139 1373 IPR003439 GO:0005524
Car01g02908 1377 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 196 1357 - -
Car01g02908 1377 MobiDBLite consensus disorder prediction 780 804 - -
Car01g02908 1377 Pfam ABC transporter 573 706 IPR003439 GO:0005524
Car01g02908 1377 Gene3D ABC transporter type 1, transmembrane domain 217 524 IPR036640 GO:0005524|GO:0016021
Car01g02908 1377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1132 1364 IPR027417 -
Car01g02908 1377 PANTHER MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7 196 1357 - -
Car01g02908 1377 Pfam ABC transporter 1158 1304 IPR003439 GO:0005524
Car01g02908 1377 ProSitePatterns ABC transporters family signature. 681 695 IPR017871 GO:0005524
Car01g02908 1377 Gene3D - 1124 1374 IPR027417 -
Car01g02908 1377 Gene3D - 534 801 IPR027417 -
Car01g02908 1377 SUPERFAMILY ABC transporter transmembrane region 218 524 IPR036640 GO:0005524|GO:0016021
Car01g02908 1377 SMART AAA_5 1166 1350 IPR003593 -
Car01g02908 1377 SMART AAA_5 582 757 IPR003593 -
Car01g02908 1377 ProSitePatterns ABC transporters family signature. 1276 1290 IPR017871 GO:0005524
Car01g02908 1377 CDD ABC_6TM_MRP7_D1_like 231 516 - -
Car01g02908 1377 Gene3D ABC transporter type 1, transmembrane domain 815 942 IPR036640 GO:0005524|GO:0016021
Car01g02908 1377 Gene3D ABC transporter type 1, transmembrane domain 943 1123 IPR036640 GO:0005524|GO:0016021
Car01g02908 1377 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 552 780 IPR003439 GO:0005524
Car01g02908 1377 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 848 1104 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g02908 1377 CDD ABCC_MRP_domain1 554 756 - -
Car01g02908 1377 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 233 508 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g02908 1377 Pfam ABC transporter transmembrane region 944 1066 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g02908 1377 Pfam ABC transporter transmembrane region 230 496 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g02908 1377 Pfam ABC transporter transmembrane region 849 941 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car01g02908 1377 CDD ABC_6TM_MRP7_D2_like 847 1116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02908 Car-Chr1 54077152 54091282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02908 572 805 Calmodulin-binding Proteins AT2G36910 26.482 1.89e-19 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02908 K05674 - gmx:100814181 2298.86