Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02904 ATGGATCACCACCGTCACAACAAAAAAAGAAACATCCTTTTCAACAAATACGAGATAGGTAAAATCCTCGGACAAGGCAATTTCGCCAAGGTATACCATGGAAGAAACATCAACACCAACGAGAACGTGGCAATCAAAGTCATTAAGAAAGAGAAGCTGAAAAAAGAGAGACTCATGAAACAAATTAAACGCGAAGTTTCCGTTATGCGTCTCGTTCGTCACCCACACATCGTTGAACTCAAAGAAGTCATGGCTAACAAAGCGAAAGTATTCATGGTAGTTGAATACGTTAAAGGAGGTGAACTTTTCGCTAAAGTCACAAAGGGTAAAATGGAAGAACACATCGCTAGGAAATATTTTCAACAATTAATCAGCGCCGTTGATTTCTGTCACAGCCGCGGCGTTACTCACCGTGATCTAAAACCAGAGAATCTTCTATTAGATGAAAATGAAGATCTGAAGGTTTCCGATTTCGGATTATCGGCTTTGCCGGAACAACGGCGATCCGACGGTATGTTGTTGACTCCATGTGGTACTCCTGCTTACGTGGCACCTGAGGTTTTGAAGAAAAAAGGTTATGATGGATCTAAAGCTGATATTTGGTCTTGTGGTGTTATTCTCTTTGCTTTGCTTTGTGGTTATCTTCCTTTTCAAGGTGAGAATGTGATGAGAATTTATAGCAAATCTTTCAAAGCTGATTATGCTTTACCTGAATGGATCTCACCTGGGGCTAAAAATTTGATTTCTAATTTACTTGTTGTTGATCCTGAAAAGAGGTTTTCAATTCCTGATATAATGAAAGATCCTTGGTTTCAAATTGGGTTTATGAGACCCATTGCTTTTTCAATGAAAGAATCTGCTATGGATGATAACATTGATTTCAGTGGTGATGACGAAAACAGCGATACTAATGAAGTTATTGTTGGTGGAATTGGAACAAAACAGCAGCAACCTCGTCCATCTTACAATGCCTTCGAGATCATTTCATCCTTATCACATGGTTTTGATTTAAGGAATTTGTTTGAGACGAGGAAGAGATCGCCGTCGATGTTTATATCGAAATTATCGGCTTCCGCGGTGGTGGGGAAGCTTGAGATGGTGGCGAAGAAGCTGAATTTGAAGGTAACTGGGAAGAAGGAATTCATGGTGAAAATGCAAGGGGCGACGGAGGGGAGGAAGGGGAAATTGGGTATGACGGTGGAGGTGTTTGAGGTGGCGCCGGAGGTTGCAGTGGTGGAGTTTTCAAAGTCAGCTGGAGACACACTTGAATATGTAAAGTTCTGTGAGGAAGAAGTTAGACCTTCACTCAAAGACATTGTTTGGAGCTGGCAGGGTGATGCACACTGA 1347 0.4143 MDHHRHNKKRNILFNKYEIGKILGQGNFAKVYHGRNINTNENVAIKVIKKEKLKKERLMKQIKREVSVMRLVRHPHIVELKEVMANKAKVFMVVEYVKGGELFAKVTKGKMEEHIARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPEQRRSDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILFALLCGYLPFQGENVMRIYSKSFKADYALPEWISPGAKNLISNLLVVDPEKRFSIPDIMKDPWFQIGFMRPIAFSMKESAMDDNIDFSGDDENSDTNEVIVGGIGTKQQQPRPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKLSASAVVGKLEMVAKKLNLKVTGKKEFMVKMQGATEGRKGKLGMTVEVFEVAPEVAVVEFSKSAGDTLEYVKFCEEEVRPSLKDIVWSWQGDAH 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02904 448 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Car01g02904 448 SUPERFAMILY Protein kinase-like (PK-like) 13 330 IPR011009 -
Car01g02904 448 CDD CIPK_C 323 437 - -
Car01g02904 448 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02904 448 Coils Coil 45 65 - -
Car01g02904 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Car01g02904 448 PANTHER CBL-INTERACTING PROTEIN KINASE 16 8 447 - -
Car01g02904 448 ProSiteProfiles NAF domain profile. 317 342 IPR018451 GO:0007165
Car01g02904 448 Gene3D Transferase(Phosphotransferase) domain 1 7 321 - -
Car01g02904 448 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02904 448 PANTHER - 8 447 - -
Car01g02904 448 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02904 448 Gene3D Kinase associated domain 1, KA1 322 442 - -
Car01g02904 448 Pfam NAF domain 321 376 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02904 Car-Chr1 54053547 54055736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02904 12 448 CBL-interacting serine-threonine protein kinases AT5G25110 61.098 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Car01g02904 Pkinase 7e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02904 - - gmx:100804244 731.865