Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02903 ATGGTTGCCCCAAgttcaagttcaggttcaggttcaggttcaggttcaggGCAGCCACAATTCATTTCAAGCACTGGAAACAGAAACCTTTCCAATGCGCCACTCATTGAGACCTCTAATACTGATCAAATTGTTGTGCCTGATAGGAGCAGCTGGAAAAATTTCTTTGCATACATGGGTCCGGGGTTTCTTGTTTCCATTGCATATATAGATCCAGGAAACTTTGAGACAGATCTACAGTCTGGGGCACAATATAAATATGAGTTACTTTGGATCATATTGGTGGCATCATGTGCTGCTCTTGTGATTCAATCAATGGCAGCCAATCTTGGGGTGGTCACTGGAAAGCACTTAGCAGAGCATTGTAGAGCTGAATACTCCCGGGTGTCCAACTTTATTCTTTGGATTATTGCTGAAATTGCCATTGTGGCCTGTGACATCCCAGAAGTGATTGGGACAGCCTTTGCATTAAATATGCTATTCAACATACCTGTTTGGATTGGTGTGCTATTAACTGGACTCAGCACATTGATGCTCTTAGCATTACAACAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTTCTTGTGTTTACAATTGCTGCGTGTTTTTGGGCTGAGCTTGGATATGCAAAGCCTGATGCTAAAGAAGTTGTAAAGGGTCTTTTTGTGCCACAACTAAAAGGGAGTGGTGCTACTGGTCTTGCAATTTCACTCCTTGGTGCTATGGTTATGCCGCACAATCTCTTCCTGCACTCGGCACTGGTACTCTCTAGGAAAATACCACGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTAATGGTGGCTTTCCTCATAAATGTTTCTGTCATTTCTGTAAGTGGTGCCATTTGCAATTCTTCGAATTTGAATGAAGAAGATCAGATGAGCTGTCAGGATTTAGATCTCAACAAAGCTTCCTTCTTACTTAGAAATGTCTTGGGGAAATGGAGTTCAAAACTGTTTGGAGTTGCTTTGCTTGCATCAGGTCAAAGCTCTACAATAACAGGAACCTATGCAGGGCAGTATGTCATGCAGAATTGCTTTCTGTTAAAGCCCTTGtttgtccgttga 1125 0.4018 MVAPSSSSGSGSGSGSGQPQFISSTGNRNLSNAPLIETSNTDQIVVPDRSSWKNFFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALVIQSMAANLGVVTGKHLAEHCRAEYSRVSNFILWIIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLMLLALQQYGVRKLEFLIAFLVFTIAACFWAELGYAKPDAKEVVKGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALMVAFLINVSVISVSGAICNSSNLNEEDQMSCQDLDLNKASFLLRNVLGKWSSKLFGVALLASGQSSTITGTYAGQYVMQNCFLLKPLFVR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02903 374 PANTHER METAL TRANSPORTER NRAMP1 20 366 - -
Car01g02903 374 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 54 364 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car01g02903 374 Pfam Natural resistance-associated macrophage protein 75 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car01g02903 374 MobiDBLite consensus disorder prediction 1 23 - -
Car01g02903 374 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car01g02903 374 PRINTS Natural resistance-associated macrophage protein signature 187 208 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car01g02903 374 PRINTS Natural resistance-associated macrophage protein signature 162 181 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car01g02903 374 PRINTS Natural resistance-associated macrophage protein signature 237 260 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car01g02903 374 PRINTS Natural resistance-associated macrophage protein signature 134 160 IPR001046 GO:0016020|GO:0030001|GO:0046873
Car01g02903 374 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 20 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02903 Car-Chr1 54037188 54042676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02903 23 369 Inorganic Solute Cotransporters AT1G15960 84.438 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02903 K21398 - gmx:100797298 634.024