Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car01g02898 | ATGGATCTTCTGAGATCAGAAAAATATTCATCTGATAATTTCAACACTTCATTTTCTCAAAATCCGATACCTAAACCGATAGAAAATGAAGAGAAAAAACAACAATATCCAAACTTTCTACTAGATCTAAGTCTCCCTAAAGATTCAGGTGATGATGAATCAAAGCAAGAACTCAATCTCATTAACTGTTTCGATACGGATACATCGATATCCATGAACTCATCCTCAGAATCTAATCATGGTAATGAATTAGAGGCAAGGATTTTCTCATGCAACTATTGCCAAAGAAAGTTTTATAGTTCACAAGCACTAGGAGGACACCAGAATGCACACAAAAGAGAAAGAAGTATGGCGAAAAGAAGATACAAAAATGGTGTTGATGCATCAGTTTCACTAGATTTTGGAAACAGGTACTCAAGCATGGCTTCTCTGCCTCTGCATGGCTCATATAACAGATCATCATCATCACTTGGAATTCAGGTGCATTCTTCTATGATTAACAAACCTTGTTTTCAAGCGCCTTTTTTCGGTTTGTCTCGTTCGAGTGTTCAAAAGCAGTGGCAGAAGCAATCACAATCTACAATTGGAAATAATATTGATGTTGAAGCAGAAACTCATGAATCATCTAGAAGATTAGGGAAGTTTTGTCCAACAAAGGTGCAAGAAGGATTTGGAGGTTACTGGTTTGGTAATAGTGCTACTCATTTGAAGACTAAACAAGAGGAGTTGCAGAACCTTGATTTGTCCCTCAAACTCTAA | 759 | 0.3676 | MDLLRSEKYSSDNFNTSFSQNPIPKPIENEEKKQQYPNFLLDLSLPKDSGDDESKQELNLINCFDTDTSISMNSSSESNHGNELEARIFSCNYCQRKFYSSQALGGHQNAHKRERSMAKRRYKNGVDASVSLDFGNRYSSMASLPLHGSYNRSSSSLGIQVHSSMINKPCFQAPFFGLSRSSVQKQWQKQSQSTIGNNIDVEAETHESSRRLGKFCPTKVQEGFGGYWFGNSATHLKTKQEELQNLDLSLKL | 252 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car01g02898 | 252 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 29 | 252 | IPR044246 | GO:0009788 | |
Car01g02898 | 252 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 29 | 252 | - | - | |
Car01g02898 | 252 | MobiDBLite | consensus disorder prediction | 8 | 24 | - | - | |
Car01g02898 | 252 | SUPERFAMILY | beta-beta-alpha zinc fingers | 86 | 117 | IPR036236 | - | |
Car01g02898 | 252 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 89 | 116 | IPR013087 | - | |
Car01g02898 | 252 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 91 | 111 | IPR013087 | - | |
Car01g02898 | 252 | Gene3D | Classic Zinc Finger | 65 | 134 | - | - | |
Car01g02898 | 252 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Car01g02898 | Car-Chr1 | 54008879 | 54009880 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Car01g02898 | 54 | 252 | C2H2 Transcription Factor Family | AT5G25160 | 41.333 | 1.24e-31 | 114 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Car01g02898 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car01g02898 | - | - | gmx:100812573 | 240.35 |