Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02898 ATGGATCTTCTGAGATCAGAAAAATATTCATCTGATAATTTCAACACTTCATTTTCTCAAAATCCGATACCTAAACCGATAGAAAATGAAGAGAAAAAACAACAATATCCAAACTTTCTACTAGATCTAAGTCTCCCTAAAGATTCAGGTGATGATGAATCAAAGCAAGAACTCAATCTCATTAACTGTTTCGATACGGATACATCGATATCCATGAACTCATCCTCAGAATCTAATCATGGTAATGAATTAGAGGCAAGGATTTTCTCATGCAACTATTGCCAAAGAAAGTTTTATAGTTCACAAGCACTAGGAGGACACCAGAATGCACACAAAAGAGAAAGAAGTATGGCGAAAAGAAGATACAAAAATGGTGTTGATGCATCAGTTTCACTAGATTTTGGAAACAGGTACTCAAGCATGGCTTCTCTGCCTCTGCATGGCTCATATAACAGATCATCATCATCACTTGGAATTCAGGTGCATTCTTCTATGATTAACAAACCTTGTTTTCAAGCGCCTTTTTTCGGTTTGTCTCGTTCGAGTGTTCAAAAGCAGTGGCAGAAGCAATCACAATCTACAATTGGAAATAATATTGATGTTGAAGCAGAAACTCATGAATCATCTAGAAGATTAGGGAAGTTTTGTCCAACAAAGGTGCAAGAAGGATTTGGAGGTTACTGGTTTGGTAATAGTGCTACTCATTTGAAGACTAAACAAGAGGAGTTGCAGAACCTTGATTTGTCCCTCAAACTCTAA 759 0.3676 MDLLRSEKYSSDNFNTSFSQNPIPKPIENEEKKQQYPNFLLDLSLPKDSGDDESKQELNLINCFDTDTSISMNSSSESNHGNELEARIFSCNYCQRKFYSSQALGGHQNAHKRERSMAKRRYKNGVDASVSLDFGNRYSSMASLPLHGSYNRSSSSLGIQVHSSMINKPCFQAPFFGLSRSSVQKQWQKQSQSTIGNNIDVEAETHESSRRLGKFCPTKVQEGFGGYWFGNSATHLKTKQEELQNLDLSLKL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02898 252 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 29 252 IPR044246 GO:0009788
Car01g02898 252 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 29 252 - -
Car01g02898 252 MobiDBLite consensus disorder prediction 8 24 - -
Car01g02898 252 SUPERFAMILY beta-beta-alpha zinc fingers 86 117 IPR036236 -
Car01g02898 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Car01g02898 252 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Car01g02898 252 Gene3D Classic Zinc Finger 65 134 - -
Car01g02898 252 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02898 Car-Chr1 54008879 54009880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02898 54 252 C2H2 Transcription Factor Family AT5G25160 41.333 1.24e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car01g02898 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02898 - - gmx:100812573 240.35