Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02894 ATGAATCTTCTAGTTTTGTTCTTCATTCCCATTACCATTTCTCTTTTCTCAACAATTCTTCATGCAAATGCTCAAGCTGAATCTCCAGGAAATCAGGTGGTTAAAATAGTGCACCACCAGAATTTGAATAAGCCGATTCTTGTAGCACTAATTGCTTGTTCTGCTCTTCTTGCTGGAATCTTCATGTTCTTAATTTATATCTTTTTCCGTCGACATAAAAACTTAACAACCTCCACAAGTAAAAGTCATGGAACAATAGAGGCTGCAAAAGGGGAAAAGGAAACATTAAGCTCTGTTAATGCTAAACTTAACTACTCAAGAATGGCTGATAAGAAGAGTGCAATTGCTATTTTCGACTTTCAGTTGTTAGAGGCAGCAACAAACAACTTTTCCACAAATAATATTATGGGAGAGAGTGGTTCTAGAATTGTTTACAGAGCTCGTTTCGATGAACATTTTCAGGCTGCTGTGAAAAAAGCTGACAGTGATGCTGATAGAGAATTTGAGAATGAAGTGAGTATGTTGAGCAAGATAAGGCATCAGAATATCATAAAACTCCTAGGCTATTGTATTCATGGCGAATCGAGGTTTCTTGTTTATGAATTCATGGAGTGTGGTTCTTTGGAAACTCAATTGCATGGGCCTACTCATGGATCATCTTTAACTTGGTATATCCGGTTAAGAATTGCAATTGATGTTGCTAGagcattagaatatctccacgagcactctaatcctcctgtggttcatagagacttaaaatcttccaatgttcttctggaTTCTGACTTTAATGTCAAGCTATCAAATTTTGGACTTGCTGTAGCTTCTGGCGTGCAACACAAGAACATGAAGATGTCAGGAACTTTGGGATATGTGGCACCTGAGTACATATCACATGGTAAACTAACTGATAAGAGCGATGTGTATGCTTTTGGGGTTGTCCTTTTAGAACTTCTCACCGGAAGAAAACCTATGGAGAACATGTCCTCAGACCAATATCAATCTCTGGTTTCATGGGCCATGCCTCAGCTAACTGATAGATCAAAGCTTCCAAGTATTCTAGATCCTGTTATCCAAAACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTGTTATGTGTGCAAGCAGAACCAAGTTATAGGCCACTTATAACAGATGTTCTGCACTCTCTCATTCCTTTGGTACCCTTAGAACTTGGAAGATCACTCAGAGTTACAGAACCAATCAGCTCAGAGAATTTACAATGA 1263 0.3618 MNLLVLFFIPITISLFSTILHANAQAESPGNQVVKIVHHQNLNKPILVALIACSALLAGIFMFLIYIFFRRHKNLTTSTSKSHGTIEAAKGEKETLSSVNAKLNYSRMADKKSAIAIFDFQLLEAATNNFSTNNIMGESGSRIVYRARFDEHFQAAVKKADSDADREFENEVSMLSKIRHQNIIKLLGYCIHGESRFLVYEFMECGSLETQLHGPTHGSSLTWYIRLRIAIDVARALEYLHEHSNPPVVHRDLKSSNVLLDSDFNVKLSNFGLAVASGVQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMENMSSDQYQSLVSWAMPQLTDRSKLPSILDPVIQNTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPLELGRSLRVTEPISSENLQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02894 420 ProSiteProfiles Protein kinase domain profile. 130 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02894 420 Pfam Protein tyrosine and serine/threonine kinase 144 363 IPR001245 GO:0004672|GO:0006468
Car01g02894 420 Gene3D Phosphorylase Kinase; domain 1 89 202 - -
Car01g02894 420 SMART serkin_6 130 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02894 420 Gene3D Transferase(Phosphotransferase) domain 1 203 401 - -
Car01g02894 420 PANTHER RECEPTOR-LIKE KINASE 20 411 - -
Car01g02894 420 PANTHER OS01G0253100 PROTEIN 20 411 IPR045271 GO:0004714|GO:0006468
Car01g02894 420 SUPERFAMILY Protein kinase-like (PK-like) 109 396 IPR011009 -
Car01g02894 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02894 Car-Chr1 53992180 53995359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02894 26 342 Receptor kinase-like Gene Family AT1G80640 47.516 8.94e-103 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Car01g02894 PK_Tyr_Ser-Thr 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02894 - - gmx:100811188 675.241