Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02890 ATGGACCAATCATGCCAAAATTCCCCTCTTCATTTGGAAGTGTGTGATTTGGAGAATATGGCAGAACAGTGTCAAAATAGTATTGATGATGATGATGAGTTCTTAAGAAACATATTCCTTCAACAACCTGAAGAAGCAAAGTCATCTTCTGAAAGTGAAAATCAATTACAATATCTGCAACTACAGAACAACAACAATAGATCAGAGAAAAGGGTTCACAATTCAAAGATGACAACTCCGAGAACATTCATAATCTCTTTTGATAAATCCACAATAATACCAGCAGCAACAGTAGAAGTTGAAGAAGAACCTAATAAACGAATGGAGAGAAGAAGTGGTTCAAAATTACCTAATTCGCCTTTGTCAGAAAATAAAAAAAGTATGGATTCAAAATCAAAAGCAAATCAAGGAGGAAAGAAAAGCAGAAGCGATTCTCAGTATTTGGATCATATTATAGCAGAGAGAAAACGGAGATTGGAACTTACACAGAAGTTCATTGCACTTTCTGCCACCATACCTGGCTTGAAGAAGACGGACAAGACCACAATACTTGGCGAAGCAATCAGTTATGTGAAAGTACTTAAAGAACGTGTGAGGGAGCTTGAGGAACGAAACAAGATGAAGACAGAATCAACAATAATCCTGAATAAGAATGATTTTTGTTCAAATGACACAAATTTAGAGGATTGGTGTGAATTGCTCCCTGATGTTAAAGTAAGAGTGTTGGAAAATGAGGTACTTATTGAGATCCACTGTGAGAAGCAAAATGGAATTGAGATCAAAATATTGGACTTGCTTGAAAATAATCTTCATCTGCTTGTGACTGCCAGCAGTGTATTGCCTTTTGGTAATTCAACTCTTGGCATTACTATTATCGCTCAGATGGGTGTGGCGTACAAAGTGACGGTGAATGATCTGGTGAAACCCCTTCGTCAACTGCTTCTGAATATCAGAACCAACAAAACTGATCCGTACTAG 978 0.3722 MDQSCQNSPLHLEVCDLENMAEQCQNSIDDDDEFLRNIFLQQPEEAKSSSESENQLQYLQLQNNNNRSEKRVHNSKMTTPRTFIISFDKSTIIPAATVEVEEEPNKRMERRSGSKLPNSPLSENKKSMDSKSKANQGGKKSRSDSQYLDHIIAERKRRLELTQKFIALSATIPGLKKTDKTTILGEAISYVKVLKERVRELEERNKMKTESTIILNKNDFCSNDTNLEDWCELLPDVKVRVLENEVLIEIHCEKQNGIEIKILDLLENNLHLLVTASSVLPFGNSTLGITIIAQMGVAYKVTVNDLVKPLRQLLLNIRTNKTDPY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02890 325 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 6 317 - -
Car01g02890 325 Gene3D - 135 210 IPR036638 GO:0046983
Car01g02890 325 MobiDBLite consensus disorder prediction 98 147 - -
Car01g02890 325 PANTHER BHLH TRANSCRIPTION FACTOR 6 317 - -
Car01g02890 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 210 IPR036638 GO:0046983
Car01g02890 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Car01g02890 325 MobiDBLite consensus disorder prediction 126 147 - -
Car01g02890 325 Coils Coil 184 211 - -
Car01g02890 325 SMART finulus 151 200 IPR011598 GO:0046983
Car01g02890 325 Pfam Helix-loop-helix DNA-binding domain 150 194 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02890 Car-Chr1 53965600 53968844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02890 141 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.849 1.81e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car01g02890 HLH 2.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02890 - - cam:101501528 605.134