Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02889 ATGGAGGATTGGTGGGAGAATTGGTTCTCCGATTtgGATATGAACGGTGATAATAGCTCCTTAAAATTAAACGAATGCGAAATGAATTCGTGTTGTAATTATAAAGCTCGTGCTACAGAAGGAAGAAAGAGGGTACGAAGTTGTTGGGAGATAGAAGATCACGTAATGGCCGAGAGAAAAAGGAGACACGAAATGGCAGAGAGATTAGTAGCACTTTCGTCTATTATACCTGGTTTGAAAAAGATAGACAAGGCCTCTGTACTTGGTGAAGCTATTAATTACGTTAAACAACTTAAAGGACGCATAGCAATTCTGGAGCAACAAAGTAATAATAAGAGTAAGAGGACAAAATGTACCAAATCCATAATCTCTTTTACCCAATCTCAATATCATCCACCTAATCATAATCATAATTTGGACTCCAATCAAGTGCTCCCTCAAATCGAAGCCATATGCATAGAGTCAGAAAAGGAGGTACTATTTATTAGAATCCAATGTGAGAAATGTAAAAGCATTTTGTTCACACTATTGGTCATACTTCAAAATATGCACCTCTCTATTTCAAGTAGCAGTGTACTTCCATTTGGTAAAAATACCCTCAACATTGCCATCATTGCTAAGATGGGGGAGGAATACAAAATAACAGGGGAAGAATTGGTGAAAAAGTTGAGACAAGATCTTATGGAGTTATATGAAATGCAACATCATGTGATTCATGCTAGTGTATCAAAAGAATTATAG 741 0.3644 MEDWWENWFSDLDMNGDNSSLKLNECEMNSCCNYKARATEGRKRVRSCWEIEDHVMAERKRRHEMAERLVALSSIIPGLKKIDKASVLGEAINYVKQLKGRIAILEQQSNNKSKRTKCTKSIISFTQSQYHPPNHNHNLDSNQVLPQIEAICIESEKEVLFIRIQCEKCKSILFTLLVILQNMHLSISSSSVLPFGKNTLNIAIIAKMGEEYKITGEELVKKLRQDLMELYEMQHHVIHASVSKEL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02889 246 Coils Coil 95 115 - -
Car01g02889 246 Gene3D - 51 123 IPR036638 GO:0046983
Car01g02889 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 98 IPR011598 GO:0046983
Car01g02889 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 124 IPR036638 GO:0046983
Car01g02889 246 SMART finulus 55 104 IPR011598 GO:0046983
Car01g02889 246 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 6 233 - -
Car01g02889 246 PANTHER BHLH TRANSCRIPTION FACTOR 6 233 - -
Car01g02889 246 Pfam Helix-loop-helix DNA-binding domain 54 99 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02889 Car-Chr1 53960418 53962510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02889 41 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.384 4.07e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car01g02889 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02889 - - cam:101501845 496.508