Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02888 ATGTGGAGTTCGAGCAGAGTCTCCGAGGCCGAAGAGGAGAAGCAGAGTGAATCTTGTTCCTTCTCAACTTCTCTCTTCAATTTCTCTTCCGGCAACCCTAGAATCGAAGAAACTCGCGGCCTCATGCACGTCTTCCCCGAAGACACTCCTTCTTCTCTTCCGGTTGGACGGAAACCGTTGGCGTGTGTTGTGGGAGTTCCTAATCACATGACTTATGCGGATTTCTGCCAATTCTGTGGTTCGTTTATTCATCATATTCTTGAGATGCGTATTGTGAGGATGGATTTTATGGAAGATCGTTACAGTGTTTTAATTCGATTCGATCAACAACACTCTACAGACGCTTTCTACAATCACTACAATGGTCGACGTTTCTCGTCTCTCGAGGATGAGATGTGCCGAGTTGTTTTCACGTTAGATGTGCAGTACACTGGGTCAATTGAACATGCACAACCATCCAATGCTACTTCAACTGAACAACCTACATGTCCAGTTTGCCTTGAGCGATTAGATCAAGATACGAGTGGAATTCTTACAACCATATGCAATCATTCTTTCCATTCTTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAACAGCAAGCTGAAAAATCTATATGTTTCGTTTGTCAAACCACTGAGAACCTTTGGATATGTGTTATATGTGGGTTTGTTGGCTGTGGGAGATATAAAGGAGGGCATGCCATAATACACTGGAAAGAGACACAACATTGCTATTCCTTAGAAGTGGAAACTAAGCGTGTTTGGGATTATGTAGGAGACAACTACGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTAGTTGAGCTGAACGCTCACTGTGTGCACGAAGACAGTGGATGTGGAAGTTGCAGTTGTGGAGATAATGTCATGAGAGAGGCTATGCTTAATAGTAAAGTCGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATTATATTTTGAATCCTTATTACAACAAGTAGAACAAGAAACTGAAAGAAAAATTTCCGTAGCTGCTCAGAAGGCTGTCAGTCTCAAACAGCAGAAGATTCAGTCCAAGATTGATAGGTGTAACAAAGAGAAGAAATTTCTGGATGAGCTTAACGAAAATCTTTTGAAAAATGAGGAGATCTGGAAAGCCAAGATACTTGAGATCGAAGAGAGGGAGAAAAAGGCTTTAAGGCTTACTAATGGTAAGATAATGGCCCTAGAAAAACAGGTAAGACATACCGTTTCATTTTTTTTGTTAAATCTTGGATGGAGGGGTCTGTTTCAGAGAGCAGCAGGAGTTTGA 1347 0.4128 MWSSSRVSEAEEEKQSESCSFSTSLFNFSSGNPRIEETRGLMHVFPEDTPSSLPVGRKPLACVVGVPNHMTYADFCQFCGSFIHHILEMRIVRMDFMEDRYSVLIRFDQQHSTDAFYNHYNGRRFSSLEDEMCRVVFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHSSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNAHCVHEDSGCGSCSCGDNVMREAMLNSKVEAIVNEYNELLATQLENQKLYFESLLQQVEQETERKISVAAQKAVSLKQQKIQSKIDRCNKEKKFLDELNENLLKNEEIWKAKILEIEEREKKALRLTNGKIMALEKQVRHTVSFFLLNLGWRGLFQRAAGV 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02888 448 CDD RING-H2_BRAP2 161 204 - -
Car01g02888 448 SMART Zf_UBP_1 213 262 IPR001607 GO:0008270
Car01g02888 448 Pfam Zn-finger in ubiquitin-hydrolases and other protein 214 273 IPR001607 GO:0008270
Car01g02888 448 Coils Coil 372 406 - -
Car01g02888 448 Pfam Ring finger domain 162 203 IPR001841 -
Car01g02888 448 SUPERFAMILY RING/U-box 179 278 - -
Car01g02888 448 ProSiteProfiles Zinc finger UBP-type profile. 197 290 IPR001607 GO:0008270
Car01g02888 448 SMART ring_2 163 202 IPR001841 -
Car01g02888 448 ProSiteProfiles Zinc finger RING-type profile. 163 203 IPR001841 -
Car01g02888 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 205 IPR013083 -
Car01g02888 448 Pfam BRCA1-associated protein 2 54 150 IPR011422 -
Car01g02888 448 Coils Coil 328 348 - -
Car01g02888 448 CDD RRM_BRAP2_like 62 142 - -
Car01g02888 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 288 IPR013083 -
Car01g02888 448 PANTHER BRCA1-ASSOCIATED PROTEIN 5 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02888 Car-Chr1 53949061 53953532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02888 159 203 C3H Transcription Factor Family AT1G72220 48.936 4.31e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02888 K10632 - gmx:100794688 734.561