Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02871 ATGGCAGTTATATCCCTCTCTCTACTCTCACCCCCTTCCACTCATTCTTGTTTCTATACACGAATCAATTTCCGCTCCCACAACAGTAACAACAATTTCCTTTCGATtcattccccttctccttttccttctactttctccaactccAATTCAAAGGTTTCTAGTAGAACAAAACGCTTTCACACTGTTTTTGCTGCTTCTTCTGACTATTATTCTACTCTCGGAGTTCCCAAATCCGCCACCGCTAAAGAAATCAAAGCCGCTTATCGAAGGTTAGCTCGTCAGTACCATCCTGATGTGAACAAGGAACCTGGGGCAACTGAAAAGTTCAAAGAGATCAGTGCTGCATATGAGGTGCTATCAGATGACAAAAAGAGGGCTTTGTATGATCAATATGGAGAAGCAGGAGTTAAGAGTGCAGTGGGAGGAGGATCAAGTGCCTATACGACCAATCCATTCGACTTATTTGAGACATTTTTTGGGCCAAATATGGGTGGCTTTGCTGGTATGGACCCAACTGGATTTGGCACACGGCGTCGTAGTACTGTTACTAAGGGTGAAGACATCCGGTATGATTTCTCCTTGGAGTTTTCTGAGGCAATTTTTGGAACAGAGAAAGAGTTCGAGCTTTTCCATTTAGAAACATGTGAAGTCTGTACTGGTACTGGTGCAAAGTTAGGCTCCAAGATGAGAGTATGTTCAACTTGTGGTGGGAGGGGTCAGGTGATGAGGACCGAACAAACACCTTTTGGATTGTTCTCACAGGTTTCAGTATGTCCAAGCTGTGGAGGTGATGGTGAAGTCATATCTGAATATTGTCGTAAATGCAGTGGTGAAGGACGCATACGGGTTAAGAAAAGTATGAAAGTTAAAGTTCCTCCTGGGGTTAGCTCGGGCAGTATTTTAAGAGTTGCTGGGGAGGGTGATGCTGGACCAAGAGGGGGTCCTCCAGGAGATCTTTACGTTTATCTCGATGTGCAAGAGATACCAGGAATTCAAAGAGACGACATTAATCTCCGCTCAACAATATCAGTCAGTTATCTAGATGCTATACTGGGGTCTGTAGTGAAGGTTAAGACAGTTGAAGGAACTTCTGAACTACAAATCCCTTCCGGCACCCAACCTGGAGATATCCTCGTCCTTGCAAGGAAAGGTGTACCAAAATTAAACAAGCCATCAATACGTGGTGACCACCTATTTACTGTTAAAGTTACAATACCGAAACGTATTAGTTCAAAGGAGCGTGAGGTACTTGAAGAACTTGCTTCTCTAGGTGACACAAGCAGTCATTCCAGATCCCGTCCTAGAACTCAATCTTCCACAGGAAGTAAGGAAGGTCCTGCAGCTCAAAGGGCCGAAAGTCCAATAGCAACAGTCACAGAAAAACCAGAGAAATCAGAAGACCAAGATGACTTATGGAATAAACTAAAGAATGCGGCTGGGTCTGTGGCAAATGGAGCTCTAAAGTGGTTTAAAGATAATCTTTAG 1488 0.4261 MAVISLSLLSPPSTHSCFYTRINFRSHNSNNNFLSIHSPSPFPSTFSNSNSKVSSRTKRFHTVFAASSDYYSTLGVPKSATAKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKSAVGGGSSAYTTNPFDLFETFFGPNMGGFAGMDPTGFGTRRRSTVTKGEDIRYDFSLEFSEAIFGTEKEFELFHLETCEVCTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPSCGGDGEVISEYCRKCSGEGRIRVKKSMKVKVPPGVSSGSILRVAGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLRSTISVSYLDAILGSVVKVKTVEGTSELQIPSGTQPGDILVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISSKEREVLEELASLGDTSSHSRSRPRTQSSTGSKEGPAAQRAESPIATVTEKPEKSEDQDDLWNKLKNAAGSVANGALKWFKDNL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02871 495 CDD DnaJ_C 187 410 - -
Car01g02871 495 MobiDBLite consensus disorder prediction 421 473 - -
Car01g02871 495 Hamap Chaperone protein DnaJ [dnaJ]. 66 479 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Car01g02871 495 MobiDBLite consensus disorder prediction 424 447 - -
Car01g02871 495 ProSitePatterns Nt-dnaJ domain signature. 110 129 IPR018253 -
Car01g02871 495 Gene3D - 186 322 - -
Car01g02871 495 Gene3D DnaJ domain 65 171 IPR036869 -
Car01g02871 495 SUPERFAMILY HSP40/DnaJ peptide-binding domain 333 418 IPR008971 GO:0006457|GO:0051082
Car01g02871 495 TIGRFAM DnaJ_bact: chaperone protein DnaJ 69 423 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Car01g02871 495 Pfam DnaJ central domain 216 280 IPR001305 GO:0031072|GO:0051082
Car01g02871 495 PRINTS DnaJ domain signature 71 89 IPR001623 -
Car01g02871 495 PRINTS DnaJ domain signature 89 104 IPR001623 -
Car01g02871 495 PRINTS DnaJ domain signature 105 125 IPR001623 -
Car01g02871 495 PRINTS DnaJ domain signature 125 144 IPR001623 -
Car01g02871 495 MobiDBLite consensus disorder prediction 458 473 - -
Car01g02871 495 Gene3D - 216 280 - -
Car01g02871 495 SUPERFAMILY Chaperone J-domain 65 175 IPR036869 -
Car01g02871 495 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 59 437 - -
Car01g02871 495 SUPERFAMILY HSP40/DnaJ peptide-binding domain 184 335 IPR008971 GO:0006457|GO:0051082
Car01g02871 495 CDD DnaJ 69 122 IPR001623 -
Car01g02871 495 Pfam DnaJ domain 69 130 IPR001623 -
Car01g02871 495 SMART dnaj_3 68 125 IPR001623 -
Car01g02871 495 CDD DnaJ_zf 216 280 IPR001305 GO:0031072|GO:0051082
Car01g02871 495 Gene3D - 332 424 - -
Car01g02871 495 PANTHER MOLECULAR CHAPERONE HSP40/DNAJ FAMILY PROTEIN 59 437 - -
Car01g02871 495 ProSiteProfiles Zinc finger CR-type profile. 203 285 IPR001305 GO:0031072|GO:0051082
Car01g02871 495 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 203 283 IPR036410 -
Car01g02871 495 ProSiteProfiles dnaJ domain profile. 69 133 IPR001623 -
Car01g02871 495 Pfam DnaJ C terminal domain 189 407 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02871 Car-Chr1 53830911 53837384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02871 70 176 C2H2 Transcription Factor Family AT1G74250 37.719 1.34e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02871 K03686 - gmx:100798567 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02871 01 53830911 53837384 Car01g02871 01 53830911 53837384 ECH