Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02858 ATGGTACAATCAAAGAAGTTCAGAGGTGTTAGGCAACGCCATTGGGGCTCTTGGGTGTCTGAGATTCGTCATCCATTGTTGAAAAGGAGGGTGTGGCTAGGAACATTTGAAACAGCTGAAGAAGCAGCTAAAGCATATGATGAAGCAGCCATTTTGATGAGTGGAAGAAACGCCAAAACCAACTTTCCAATTTTGGACAGTAAAATAAATTCTATttcatcttcaacttcttcttcaacatcattttcTGCAGTTCTAAGTGCAAAGTTAAGGAAGTGTTGCAAGTTTCCTTCACCTTCCCTCACATGTCTGAGGCTGGATGCAGAGAATTCAAACTTTGGAGTGTGGCAGAAAGGTGCTGGTCCTCGTTCTGAATCAAATTGGATTATGATGGTTGAGTTGGAAAGGAAAAAAAGTGATTCTGATGATTCAGTGGCAGAGAAGATTAAGCCAGAGGAAAGTAAAAATGTGTTGGATGAAGAGCAGAAAATTGCTTTGCAGATGATAGAAGAACTTCTCAATAGGAACTAA 531 0.3823 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPILDSKINSISSSTSSSTSFSAVLSAKLRKCCKFPSPSLTCLRLDAENSNFGVWQKGAGPRSESNWIMMVELERKKSDSDDSVAEKIKPEESKNVLDEEQKIALQMIEELLNRN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02858 176 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Car01g02858 176 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Car01g02858 176 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Car01g02858 176 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Car01g02858 176 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Car01g02858 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WIN1-LIKE 1 176 - -
Car01g02858 176 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Car01g02858 176 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Car01g02858 176 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Car01g02858 176 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02858 Car-Chr1 53734123 53735513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02858 1 176 AP2-EREBP Transcription Factor Family AT1G15360 60.302 5.06e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car01g02858 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02858 - - gmx:100785898 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02858 01 53734123 53735513 Car01g02858 01 53734123 53735513 ECH