Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02828 ATGGTGGAAACAGAAACGTACCCTGAAACACAACCACATTTCAAAAAACCTAGAATATCAGAAGAAACCCATTTCAATAATAATGTTAACTTGAAGACGAAGACTCAACTATGCAGAAGATTCATGCAAGGTGTGTGTTTTCTTGGTCCCAAATGCAACTACGCACATGGATCCTCCGAACTCAGaacaacaacaacaacaccaaaacTCTGCAGATTGTTTTTACGCAACAAACACTGCTCTTACGGACACACTTGTCGTTTCCTTCATCACTCTTCTCAACAATCACAACCTGTGGTAATGAAGAATCCGGGATGCAGGATGATGCAAACTTGtgctgctgctgctgctgctACAATTGATGGCAACTCTTCTGCCCAGAACAAGATAATGCAAACTTCTACTACTCCTACTACAAATGCCTCAACCAGCACGGTGGCAACTAGCTCTTTGCATAAGAATGGACCCTATGGTGTTAAATTCATATTCAAGAAAAAGGAATTGCAAAAGATCAGTGGCATCTATGCTGATTGGATTTAA 540 0.3722 MVETETYPETQPHFKKPRISEETHFNNNVNLKTKTQLCRRFMQGVCFLGPKCNYAHGSSELRTTTTTPKLCRLFLRNKHCSYGHTCRFLHHSSQQSQPVVMKNPGCRMMQTCAAAAAATIDGNSSAQNKIMQTSTTPTTNASTSTVATSSLHKNGPYGVKFIFKKKELQKISGIYADWI 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02828 179 SMART c3hfinal6 67 92 IPR000571 GO:0046872
Car01g02828 179 SMART c3hfinal6 32 58 IPR000571 GO:0046872
Car01g02828 179 Gene3D - 27 64 - -
Car01g02828 179 Gene3D - 68 97 - -
Car01g02828 179 SUPERFAMILY CCCH zinc finger 65 94 IPR036855 GO:0046872
Car01g02828 179 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 69 91 IPR000571 GO:0046872
Car01g02828 179 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 34 57 IPR000571 GO:0046872
Car01g02828 179 PANTHER CCCH ZINC FINGER/TIS11-RELATED 14 178 IPR045877 GO:0003729
Car01g02828 179 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 14 178 - -
Car01g02828 179 ProSiteProfiles Zinc finger C3H1-type profile. 32 59 IPR000571 GO:0046872
Car01g02828 179 SUPERFAMILY CCCH zinc finger 31 63 IPR036855 GO:0046872
Car01g02828 179 ProSiteProfiles Zinc finger C3H1-type profile. 65 93 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02828 33 100 C3H Transcription Factor Family AT1G68200 39.726 2.94e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car01g02828 zf-CCCH 4.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02828 - - cam:101493245 357.066