Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02819 ATGTCAAAGAAGACTAGCTTAGGTAGACAAAAAATCCTCATTGAAAAAATACAGAAAAAAAGTCATTTACAAGTTACATTCTCTAAACGACGATCAGGACTATTTAAAAAAGCTAGTGAACTTTGCACCCTTTGTGGAGTTGAGATTGCAATTATAGTTTTCTCTCCCGCTAATAAGCCGTTTTCTTTTGGTCATTCAGAAATTGAATCTATCATTGACCGTTATTTGACTCGTAATCCTCCACAAGAATCTAATACTCACCAAATTGTTGAGGCTCATAGAAATGCTAATGTCCATGATCTCAATATGCAACTGACTCAACTTCTTAACCATTTGGAGATTGAAAAGAAAAAAGGGGAAGAGATAGACCACATGAGAAAAGCTAGGCAAAGGAAATTTTGGTGGGAGTGCCCTATTGATGAACTTGGCTTCTATGAATTGCTCCAATTAAAGGTTTCAATTGAGGAGTTGAAGAAGAATTTGGGAAAATTTGCTAGCAAATGCATCATGGAACTATCTAACATGTCTTCACCAAATATTGGTTTCCAATATGGATATTTTTGA 564 0.3511 MSKKTSLGRQKILIEKIQKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPANKPFSFGHSEIESIIDRYLTRNPPQESNTHQIVEAHRNANVHDLNMQLTQLLNHLEIEKKKGEEIDHMRKARQRKFWWECPIDELGFYELLQLKVSIEELKKNLGKFASKCIMELSNMSSPNIGFQYGYF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02819 187 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 6 176 - -
Car01g02819 187 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Car01g02819 187 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Car01g02819 187 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Car01g02819 187 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Car01g02819 187 PANTHER MADS BOX PROTEIN 6 176 - -
Car01g02819 187 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Car01g02819 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Car01g02819 187 Gene3D - 90 175 - -
Car01g02819 187 Gene3D - 19 89 IPR036879 GO:0003677|GO:0046983
Car01g02819 187 SUPERFAMILY SRF-like 8 86 IPR036879 GO:0003677|GO:0046983
Car01g02819 187 CDD MADS_MEF2_like 8 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02819 Car-Chr1 53457680 53458243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02819 6 161 Type I MADS-box Gene Family AT2G24840 54.088 5.64e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car01g02819 SRF-TF 6.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02819 - - cam:101493882 379.407