Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02778 ATGGCAGCCTCCGAACAATCCTCTTCCACTTCGGAAGCTATTTCCAACAAAGTTTCTGATGACGAAAGCAATAGCGACGACAACAAGGTGATGCAAATTAAAGAGAATGACGATGTAAAATCCGAACAACATCAAACTTCAAACTCCAATTTTCTTTTCACAAAGCTTTCTAACGACGGTTTGGTTTGTGGACCGAAGGTGCAAGAACTTGATTTCTTCAATCCTTCGAAGAATATAGAAGTAGGTTCGTCTTCGTTATATTGGACTAATAAGACCAACAATATTGAAGAGAACATTGAAGAAGAAAAGTCTTCAGAGTCGAAGGCTTTTTCATGCAACTTTTGTTCGAGACAATTTTCTACTTCACAAGCTTTAGGAGGACATCAAAATGCTCATAAGAGGGAGCGTGCGGTCGCAAAACATCGCCAAGAGATTCAAAATGGTTTTGGGAGCCCTAGTACGCATTTTCCTTATTACACTAACTATCCTACTCTTTCTACACCATCTTATTATGGAATTGGATCTTCCTATAATAAAGCACTTGGAGTTAGAATGGAGTCCATGATTCACAAGCCAAGTTATAATACGTGGACCCCACCTCCTTTCAAGCTTGGTTCTACTCCTATGTGGTCACCAATATTGCAAGAGATGAGAAACTTTTCTTCTTTTGATGGGTTGAAATTAGAGGATAATAACGTTGGAGAGTCTTCTGTGAATGTTGCTACTAAGTCAAACTCACCAGTAAAAAAGTCAACTATGGTTGACATTGTTGGTGATATCAACAAGGAAGAAGCCTCAAATTCTGAATCTCCTAGTCTTGATTTGTCGCTGAAGCTTTGA 840 0.3893 MAASEQSSSTSEAISNKVSDDESNSDDNKVMQIKENDDVKSEQHQTSNSNFLFTKLSNDGLVCGPKVQELDFFNPSKNIEVGSSSLYWTNKTNNIEENIEEEKSSESKAFSCNFCSRQFSTSQALGGHQNAHKRERAVAKHRQEIQNGFGSPSTHFPYYTNYPTLSTPSYYGIGSSYNKALGVRMESMIHKPSYNTWTPPPFKLGSTPMWSPILQEMRNFSSFDGLKLEDNNVGESSVNVATKSNSPVKKSTMVDIVGDINKEEASNSESPSLDLSLKL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02778 279 MobiDBLite consensus disorder prediction 19 42 - -
Car01g02778 279 SUPERFAMILY beta-beta-alpha zinc fingers 107 137 IPR036236 -
Car01g02778 279 Gene3D Classic Zinc Finger 89 153 - -
Car01g02778 279 PANTHER ZINC FINGER PROTEIN JAGGED 5 265 IPR045320 GO:0003700
Car01g02778 279 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 5 265 - -
Car01g02778 279 MobiDBLite consensus disorder prediction 1 47 - -
Car01g02778 279 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Car01g02778 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Car01g02778 279 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02778 Car-Chr1 53122207 53123604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02778 104 197 C2H2 Transcription Factor Family AT5G10970 46.392 4.04e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car01g02778 zf-C2H2_6 2.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02778 - - cam:101494832 527.709