Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02775 ATGCTCCTTAAAAAACACACCCTTCTTTcatcaacaacaccaacaccaacaccaacGTTATCAATGGGTGCAGACAATAATCCACTTGCCTCTCCAGCTCTCTCTCTTAGCCTCGCGGGGATTTTTCGGCAAGGTGGTGTGGCGGCGGAGGGTGAAGGGACGACAAGTAACATGGAGGTGGAGGAAGGGGAAGAGGGGAGCACCGTGGGAGGTGAGCGCGTGGAGGAGATAATTAGCAGCGATAATTCAGGTCCTACAAAATCCAGATCAGAAGATTATTTTGAAGGAGaagatgatgaaggtgaaggtaatgatgatgatgatggtgatactaacaataataataataaaCACAAGAACAAAAAGAGGAAGAAATATCATAGGCACACTGCTCAGCAGATCAGAGTCATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAACAGAGGCAACAACTTAGCAAACAATTAGGCCTTGCTCCTAGGCAAGTTAAATTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGACATGAAAATTCATTGTTGAAAACAGAAATAGAGAAACTAAGGGAGAAAAACAAGAGCCTAAGAGAGACCATAAACAAAGCTTGTTGTCCAAACTGTGGGGTACCAACCACAAATAGAGATGGTGCTATGCCAACTGAAGAACAACAACTACGTATTGAAAATGTCAAACTCAAAGCTGAGGTAGAGAAACTGAGAGCAAGTTTAGGGAAATATGCATCAGGGACAATGTCCCCTTCATGTTCTACTAGCCATGACCAAGAGAATAAAAGTTGTTTGGATTTTTATACTGGAAGTTTTGGTCTTGATGAGTCAAGGATAATGGATGTAGTAAACCAAGCAATGGAGGAACTTATAAAGATGGCTACAAAGGGTGAACCATTATGGCTACGTAGCTTAGAAACTGGTCGTGAAATACTTAATTATGATGAATATATTAAAGAGTTTGCAATTGAAAATTCAGATAATGGAAGACCAAAGAGATCCATTGAAGCTTCAAGAGATACAGGGCTTGTTTTTTCAGATCTCCCTCGGATTGTCCAATGTTTTCTAGATGCTAAGCAATGGAAGGAAATGTTTCCATGTTTAATATCGAAGGCAGCAACCGTTGACATTATATGCAAAGGAGAAAATTCTAACAACAATGGTGCCGTGCAACTGATGTTTGCTGAGCTACAAATGCTAACTCCAATGGTACCAACTAGAGAAGTATATTTTGTGAGATACTGCAAACAGTTGAGTGGTGAACAATGGGCAATCGTTGATGTGTCCATAGACAAAGTAGAAGACAACATTGATGCATCCCTCGTCAAGTGCAGAAAACGCCCCTCCGGTTGCATTATTGAGGATAAGTCAAACGGCCATTGCAAAGTAACATGGGTGGAGCACTTGGAGTGCCAAAAGAGTGCAGTTCATTCAATGTATCGCACCATTGTCAACAGTGGCTTAGCCTTTGGGGCAAGGCATTGGATAGCGACCCTTCAACTTCAATGCGAACGTCTAGTTTTCTTCATGGCAACAAATGTTCCCATGAAGGATTCAACTGGTGTTGCTACATTGGCTGGAAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGTCATGCTATTGGTGCCTCAAGCCTCCATACATGGACTAAGGTTACTAGTAAAACAGGTGAAGACATACGAGTCAGTTCTAGAAAGAACCTGAATGATCCTGGTGAACCTCTTGGGTTGATACTGTGTGCAGTTTCTTCTGTATGGTTGCCTATATCTCCTAATGTTCTGTTTGATTTCTTGAGGGATGAAGCTCGTCGGACTGAGTGGGATATCATGTCCAGTGGTGGGAGTGTGCAGTCCATTGCAAATTTAGCCAAAGGACAAGACAGAGGCAATGCAGTAACCATCCAAACAGTTAAATCAAATGAAAACAATATGTGGATACTGCAAGATAGCTGCACAAATTCCTATGAATCAATGGTGGTATATGCTCCTGTGGACATTACTGGTATTCAGTCTGTGATGACTGGATGTGATTCGAGCAATCTTGTCATTCTTCCCTCAGGATTCTCAATTGTTCCTGATGGTCTCGAGTCAAGGCCAATGGTGATCACTTCAAGGCAGGAAGAAAAAAATACAGAGGGAGGATCTTTGTTTACAGTAGCATTCCAGATCCTTACCAATGCTTCTCCTACAGCCAAATTAACAATGGAGTCTGTGGACTCGATCAACTCTCTTGTATCATGTACATTGAGACACATCAGAACAAGTTTACATTGTGAAGATGGTTAG 2331 0.4041 MLLKKHTLLSSTTPTPTPTLSMGADNNPLASPALSLSLAGIFRQGGVAAEGEGTTSNMEVEEGEEGSTVGGERVEEIISSDNSGPTKSRSEDYFEGEDDEGEGNDDDDGDTNNNNNKHKNKKRKKYHRHTAQQIRVMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIEKLREKNKSLRETINKACCPNCGVPTTNRDGAMPTEEQQLRIENVKLKAEVEKLRASLGKYASGTMSPSCSTSHDQENKSCLDFYTGSFGLDESRIMDVVNQAMEELIKMATKGEPLWLRSLETGREILNYDEYIKEFAIENSDNGRPKRSIEASRDTGLVFSDLPRIVQCFLDAKQWKEMFPCLISKAATVDIICKGENSNNNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSGEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKSAVHSMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSLHTWTKVTSKTGEDIRVSSRKNLNDPGEPLGLILCAVSSVWLPISPNVLFDFLRDEARRTEWDIMSSGGSVQSIANLAKGQDRGNAVTIQTVKSNENNMWILQDSCTNSYESMVVYAPVDITGIQSVMTGCDSSNLVILPSGFSIVPDGLESRPMVITSRQEEKNTEGGSLFTVAFQILTNASPTAKLTMESVDSINSLVSCTLRHIRTSLHCEDG 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02775 776 SMART START_1 291 515 IPR002913 GO:0008289
Car01g02775 776 Pfam START domain 293 515 IPR002913 GO:0008289
Car01g02775 776 Gene3D - 342 510 IPR023393 -
Car01g02775 776 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 34 773 - -
Car01g02775 776 Coils Coil 230 250 - -
Car01g02775 776 SUPERFAMILY Bet v1-like 283 515 - -
Car01g02775 776 Pfam Homeodomain 123 178 IPR001356 GO:0003677
Car01g02775 776 CDD homeodomain 127 178 IPR001356 GO:0003677
Car01g02775 776 ProSiteProfiles 'Homeobox' domain profile. 120 180 IPR001356 GO:0003677
Car01g02775 776 SUPERFAMILY Homeodomain-like 110 181 IPR009057 -
Car01g02775 776 SUPERFAMILY Bet v1-like 545 767 - -
Car01g02775 776 Coils Coil 179 206 - -
Car01g02775 776 MobiDBLite consensus disorder prediction 95 109 - -
Car01g02775 776 ProSitePatterns 'Homeobox' domain signature. 155 178 IPR017970 GO:0000981|GO:0006355
Car01g02775 776 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 34 773 IPR042160 -
Car01g02775 776 MobiDBLite consensus disorder prediction 1 31 - -
Car01g02775 776 MobiDBLite consensus disorder prediction 47 130 - -
Car01g02775 776 CDD START_ArGLABRA2_like 287 514 - -
Car01g02775 776 Gene3D - 109 192 - -
Car01g02775 776 SMART HOX_1 122 184 IPR001356 GO:0003677
Car01g02775 776 ProSiteProfiles START domain profile. 282 518 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02775 Car-Chr1 53103071 53111149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02775 78 775 Homeobox Transcription Factor Family AT1G79840 65.199 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car01g02775 START 8.6e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02775 K09338 - gmx:100808292 1242.64