Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02769 ATGTCTCTCTCACTAAGATGTGCATTCTCTCATATACTCATCCTCGTAGGTTCATTTTCAATATTCCTAGTGACCCCTTTCTCTTGTTTTAGTCCTAACAAGGTTGTTAATGTTACTTCATCTAATTATGATTGGTCACCTTCAGTGGCCACTTGGTATGGACCTCCCACCGGAGATGGAAGTGAAGGTGGTGCTTGTGGATATGGAAGTGCTGTTGGACAACCTCCATTATCTTCGATGATAGCAGCCGGAAGCCCTCTCATCTATCAATCGGGCAAAGGCTGTGGTTCTTGTTATGAGGTAAAATGTACCGAAAATCCAGCATGTTCAGGAAACCCTGTCACTGTTGTAATAAGTGATGAGTGTCCAGGCTGTGGATCAGACGGTCAATATCATTTTGATTTGAGTGGCAAAGCTTTTGGTGCTATGGCAATTTCAGGTCAAGATGAAAATCTACGCAATGCTGGGAAAATATCCATTCAACATAGAAGAGTTCCATGCAACTACCCTGGTATGTCAATAGCTTTCCACGTGGACTCTGGATCTAACCAAGAATATTTTGCTACCGCGATTGAATATGAAAATGGGGATGGTGATCTTAAACAAGTTGAACTTTTGGAAGCATTTGCCAAATCTTGGGATACAATGACACAATCATGGGGTGCTGTTTGGAAATTTGATAAAGGGTCACAACTAAGAGCGCCATTTACTATTAGGCTAACCACAATTGAGTCTGGTGAGACATTTGTAGCAAAGGATGTGATTCCTGTGGGTTGGAATCCTGGTCAAACTTATAGATCAGTTGGGAATTTTTATTAA 819 0.4139 MSLSLRCAFSHILILVGSFSIFLVTPFSCFSPNKVVNVTSSNYDWSPSVATWYGPPTGDGSEGGACGYGSAVGQPPLSSMIAAGSPLIYQSGKGCGSCYEVKCTENPACSGNPVTVVISDECPGCGSDGQYHFDLSGKAFGAMAISGQDENLRNAGKISIQHRRVPCNYPGMSIAFHVDSGSNQEYFATAIEYENGDGDLKQVELLEAFAKSWDTMTQSWGAVWKFDKGSQLRAPFTIRLTTIESGETFVAKDVIPVGWNPGQTYRSVGNFY 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02769 272 Pfam Lytic transglycolase 82 161 IPR009009 -
Car01g02769 272 PRINTS Major pollen allergen Lol pI signature 83 94 IPR005795 GO:0005576|GO:0019953
Car01g02769 272 PRINTS Major pollen allergen Lol pI signature 103 113 IPR005795 GO:0005576|GO:0019953
Car01g02769 272 PRINTS Major pollen allergen Lol pI signature 144 159 IPR005795 GO:0005576|GO:0019953
Car01g02769 272 PRINTS Major pollen allergen Lol pI signature 176 191 IPR005795 GO:0005576|GO:0019953
Car01g02769 272 PRINTS Major pollen allergen Lol pI signature 192 207 IPR005795 GO:0005576|GO:0019953
Car01g02769 272 PRINTS Major pollen allergen Lol pI signature 222 239 IPR005795 GO:0005576|GO:0019953
Car01g02769 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 172 IPR007112 -
Car01g02769 272 Pfam Expansin C-terminal domain 174 256 IPR007117 -
Car01g02769 272 PANTHER EXPANSIN-B3 16 271 - -
Car01g02769 272 SUPERFAMILY Barwin-like endoglucanases 39 171 IPR036908 -
Car01g02769 272 SMART dpbb_1 81 162 IPR007112 -
Car01g02769 272 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Car01g02769 272 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Car01g02769 272 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Car01g02769 272 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576
Car01g02769 272 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576
Car01g02769 272 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576
Car01g02769 272 PANTHER EXPANSIN-B2-RELATED 16 271 - -
Car01g02769 272 SUPERFAMILY PHL pollen allergen 174 267 IPR036749 -
Car01g02769 272 Gene3D - 30 167 IPR036908 -
Car01g02769 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 267 IPR007117 -
Car01g02769 272 Gene3D - 168 268 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02769 Car-Chr1 53043335 53045019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02769 29 271 Expansin Gene Family AT1G65680 57.317 3.62e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02769 - - gmx:548090 432.95