Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02755 ATGTCTTGCAAAGATGGTAAAGGAGGATTGGATAATGGAAAATACGTTCGTTATACTCCTGAGCAAGTTGAAGCTCTTGAGAGGCTTTACCATGATTGTCCCAAACCTAGTAGCATTCGTCGCCAGCAACTTATTCGAGAGTGTCCTATTCTCTCTCACATTGAGCCTAAACAAATCAAAGTTTGGTTCCAAAATAGAAGATGTAGGGAGAAGCAGAGAAAAGAGGCTTCACGGCTGCAAGCTGTGAATAGGAAACTGACTGCTATGAATAAGCTGCTGATGGAGGAGAATGATAGGTTGCAGAAACAAGTGTCTCATTTGGTGTATGAAAATGGCTACTTTCGCCAACATACTCAAAATACTACTCTTGCAACCAAAGACACAAGCTGTGATTCAGCGGTGACTAGTGGTCAACGCAGTTTGACAGCTCAGCATCCCCCAAGGGATGCTAGTCCTGCAGGACTTTTGTCCATTGCAGAGGAAACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCAATTTCTCATGGTTGCCCTGGTGTGGCAGCAAGAGCATGTGGCCTAGTGGGTCTAGAACCTACAAGGGTTGCAGAAATCCTTAAAGATCGGCCCTCGTGGTATCGTGATTGCCGAGCTGTGGATACTCTGAATGTGCTTCCCACAGCAAATGGTGGAACCATAGAACTGCTTTACATGCAGCTATATGCGCCAACCACATTGGCTCCTGCACGGGACTTATGGTTGTTGCGCTACACATCTGTTTTAGAAGATGGAAGCCTAGTGATTTGTGAGAGGTCTCTTAAAAATACACAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCTGAGATGCTTCCCAGTGGGTACATGATAAGACCTTGTGAAGGAGGTGGTTCTATCATCCACATTGTTGATCATATGGATTTGGAGCCATGGAGTGTTCCCGAAGTACTGCGTCCACTGTATGAATCATCAACAATGTTGGCTCAGAAGACAACAATGGTGGCTCTACGTCACCTAAGGCAGATCTCACATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGTAGACGACCTGCAGCACTTCGAGCACTTGGCCAGCGATTGAGCAGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGTCAATGATTGGCAATGATGGTGCTGATGATGTTACAATTCTAGTGAATTCATCACCTGACAAATTAATGGGTCTGAATCTTTCATTTGCCAATGGATTTCCATCTGTCAGTAATGCAGTCTTATGTGCTAAAGCTTCAATGCTATTACAAAATGTACCTCCAGCCATTCTACTAAGGTTTCTACGGGAACATAGATCAGAGTGGGCAGACAACAATATGGATGCTTACTCAGCTGCTGCCATCAAAGTTGGTCCTTGTAGTTTATCAGGATCTCGGGTTGGAAATTATGGAGGCCAAGTTATTCTTCCTCTAGCTCACACTATTGAACACGAGGAGTTTCTGGAAGTCATTAAATTGGAAGGAATTGCTCATTCTCCCGAAGACACAATAATGCCTAGAGAAGTGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAAAATGCTGTTGGTACCTGTGCTGAACTTATATTTGCTCCAATTGATGCATCCTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATAATTCCTCTTGATTCTGGAAAGGAAGTGGTCAACCCAAATCGCACCCTTGACCTGGCATCTGCCCTTGATATTGGCCCTGCCGGAAACAAAGTTTCAAATGATTATTCTGGAAATTCTGGCTGTATGAGATCGGTGATGACAATAGCCTTTGAATTTGCTTTTGAAAGTCATATGCAAGAGCATGTAGCATCTATGGCACGACAATATGTTCGCAGCATTATATCTTCTGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTAATTTGAGTTCACAAGCTGGGCTCAGGACACCACTGGGTACTCCTGAAGCTCAAACCCTTGCTCGCTGGATCTGCAACAGTTATAGGTGCTTCTTGGGTGCTGAGCTACTTAAATCTAATAACGAGGGGAGTGAGTCTTTACTCAAGTCCTTGTGGCATCACTCCGATGCAATACTGTGCTGCACTCTAAAGGCGTTGCCTGTGTTCACTTTCGCAAACCAAGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCTCTACAGGATATAACGTTGGAGAAAATATTTGATGACCATGGCCGAAAGATTCTGTGCTCGGAGTTTCCCCAAATTGTACAACAGGGTTTTGCATGTCTTCAAGGGGGTCTTTGTATCTCAAGCATGGGGAGACCTATTTCATATGAAAGAGTTGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCACTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTAA 2508 0.4446 MSCKDGKGGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQNTTLATKDTSCDSAVTSGQRSLTAQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDRPSWYRDCRAVDTLNVLPTANGGTIELLYMQLYAPTTLAPARDLWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYMIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTMLAQKTTMVALRHLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEALNGFTDEGWSMIGNDGADDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDTIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEVVNPNRTLDLASALDIGPAGNKVSNDYSGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSNLSSQAGLRTPLGTPEAQTLARWICNSYRCFLGAELLKSNNEGSESLLKSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKILCSEFPQIVQQGFACLQGGLCISSMGRPISYERVVAWKVLNEEENAHCICFMFMNWSFV 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02755 835 CDD START_ArGLABRA2_like 152 367 - -
Car01g02755 835 SMART HOX_1 11 77 IPR001356 GO:0003677
Car01g02755 835 SUPERFAMILY Homeodomain-like 13 77 IPR009057 -
Car01g02755 835 CDD homeodomain 14 74 IPR001356 GO:0003677
Car01g02755 835 Pfam Homeodomain 14 72 IPR001356 GO:0003677
Car01g02755 835 CDD bZIP 66 105 - -
Car01g02755 835 Pfam MEKHLA domain 692 834 IPR013978 -
Car01g02755 835 Gene3D - 8 80 - -
Car01g02755 835 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 835 - -
Car01g02755 835 SMART START_1 157 367 IPR002913 GO:0008289
Car01g02755 835 Gene3D - 192 370 IPR023393 -
Car01g02755 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 835 IPR044830 GO:0003700
Car01g02755 835 Pfam START domain 158 366 IPR002913 GO:0008289
Car01g02755 835 Coils Coil 69 103 - -
Car01g02755 835 SUPERFAMILY Bet v1-like 157 366 - -
Car01g02755 835 ProSiteProfiles 'Homeobox' domain profile. 9 73 IPR001356 GO:0003677
Car01g02755 835 ProSiteProfiles START domain profile. 148 349 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02755 Car-Chr1 52935911 52944590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02755 1 787 Homeobox Transcription Factor Family AT1G52150 85.570 0.0 1404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car01g02755 START 2.3e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02755 K09338 - zju:107428556 1590.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02755 01 52935911 52944590 Car01g02755 01 52935911 52944590 ECH
Car01g02755 01 52935911 52944590 Car07g03175 07 59266421 59273888 PCT