Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02749 ATGACTCGGCGGTGCTCTCACTGCAGCAACAACGGCCACAACTCACGGACATGTCCGTCGAGAGGTGGCGCCGGGGTGAAAATCTTCGGTGTTAGGTTAACGGATGGATCAATCATCCAAAAGAGCGCGAGTATGGGAAATCTAACCCTCGCTAATCATCATCATTGTTCTTCTTCTTCTTCGACATACGCTGGTTCATCGCTTAATCCTGGTTCACCTTGCTCCGACCCGCCTCATGACCCGGATGGTTACTTGTCCGATGACCCGGCTCATGCATCCACCTTCGCCACCCGCCGCGGTGAGAAAAAGAAAGGTGTTCCATGGACTGAAGAAGAACATCGGTTGTTCTTGGTTGGTCTCCGGAAGCTAggcaaaggagactggcgtggcatagcacgtaattttgttgtgtcaaggacccctactcaagtagcaagtcatgcccagaagtactttatccggcagagtgctaccaggaaaaagagaCGTTCCAGCCTTTTCGACATGGCTCCAGATATGTGTCCAGATTCAACTTCAATGCCAGAAGAACAAGCACTACTTCCACCATCTGAGAACTCACAACCTTGTAATGGAAAATCACAGCCATCATTAAACCTCTCTCTAAAGTCAGAATATGAACCCATGGAAACTACTTCCGAAGAAAATGTAGAAGAGACCAATGAAACTTCAAAGGTATTGACACCAATGACTCAAAGATTCTTCCCATCTTATTTACCTGTACCATTTTCCATATGGCCATCAATTGGAGCTCCCATTGAAGAATTCAACAGAGGAGAGACATCTCAATATCATCATCAGGTCCTCAAGCCAATACCGGTCATTCCAAAGGAACCCGTCAATGTTGATGAACTTGTGGGAATGTCTCATCTGTGCATTGGGGAAACACAGGTACTTGATAGAGAGCCTTCCCCACTTTCCTTGAAGTTGTTAGGAGAGCCCTCAAGGCAATCAGCATTCCATGCAAATGCTCCCGTTGGTGGTTCCGATCTAAACAGCAGCAAGAACAGCGCCATTCAAGCAGTTTGA 1047 0.4183 MTRRCSHCSNNGHNSRTCPSRGGAGVKIFGVRLTDGSIIQKSASMGNLTLANHHHCSSSSSTYAGSSLNPGSPCSDPPHDPDGYLSDDPAHASTFATRRGEKKKGVPWTEEEHRLFLVGLRKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSATRKKRRSSLFDMAPDMCPDSTSMPEEQALLPPSENSQPCNGKSQPSLNLSLKSEYEPMETTSEENVEETNETSKVLTPMTQRFFPSYLPVPFSIWPSIGAPIEEFNRGETSQYHHQVLKPIPVIPKEPVNVDELVGMSHLCIGETQVLDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLNSSKNSAIQAV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02749 348 Gene3D - 106 157 - -
Car01g02749 348 SMART sant 104 154 IPR001005 -
Car01g02749 348 MobiDBLite consensus disorder prediction 328 348 - -
Car01g02749 348 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Car01g02749 348 MobiDBLite consensus disorder prediction 59 90 - -
Car01g02749 348 MobiDBLite consensus disorder prediction 183 207 - -
Car01g02749 348 CDD SANT 107 152 IPR001005 -
Car01g02749 348 PANTHER TRANSCRIPTION FACTOR KUA1 1 342 - -
Car01g02749 348 MobiDBLite consensus disorder prediction 1 18 - -
Car01g02749 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 156 IPR017930 -
Car01g02749 348 MobiDBLite consensus disorder prediction 174 207 - -
Car01g02749 348 Pfam Myb-like DNA-binding domain 107 152 IPR001005 -
Car01g02749 348 PANTHER OS01G0187900 PROTEIN 1 342 - -
Car01g02749 348 SUPERFAMILY Homeodomain-like 102 156 IPR009057 -
Car01g02749 348 MobiDBLite consensus disorder prediction 333 348 - -
Car01g02749 348 ProSiteProfiles SANT domain profile. 108 156 IPR017884 -
Car01g02749 348 MobiDBLite consensus disorder prediction 59 73 - -
Car01g02749 348 MobiDBLite consensus disorder prediction 1 21 - -
Car01g02749 348 ProSiteProfiles Myb-like domain profile. 100 152 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02749 Car-Chr1 52872301 52875970 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car01g02749 Myb_DNA-binding 1.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02749 - - gmx:778036 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02749 01 52872301 52875970 Car01g02749 01 52872301 52875970 ECH