Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02745 ATGAATATTCTTACACAGAAACCCCATTTGAAGTTACTACTACGTTTTCATCTTTTTCTGCTTCAACTATACTGCTTCTATTCTTATTCCACACCTATGAACTGTACCGAAACAACCCGTGTTTGCACTTCATTTTTGGCCTTTAAGCCTCAATCAAACCAAACCGTAGAACTGATACAAAGCATGTTTGATGTGTTACCAACTGACATAACTATTGAAGGCAATGGCTGGGATTATGTGTTCATCAGAAAAAACTGTTCTTGTGCTTATGGGGTGAACAAGTATCTATCTAACACCACTTTTACATTGAAATCCAATGAAGGGTTTGTATTTGAAATCGTGATGGATGCCTATGATGGCCTTGCTTTCTTTCCAAACACAACTCGTTGGGCTAGAAAAGATTCTGTCATACCATTGAACTTGTTCTGTAGCTGCTCCACTGGATTGTGGAACTATTTGGTGAGCTATGTTATGAGAGATGGAGATAGTATTGAATCATTGGCAAGCCGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTAAATGGTATCGACGATCCGGATAGTGTTAATATTGGTTCTCTCTATTACATACCTCTAGATTCTGTTCCTGGTGAGCCTTATCAACTGAAAAATAATTCTACTCCAATTCCTGTCCCTTCCCCATCTGTTTATAACTTATCAGCTACTCATGTACATGCTCATGTACCTTATGGATGGATGATAGGAGGTTTAGGGGTTGGTCTTGCGCTGATAATATTAAGCATGATTCTGTGTATGTCTCTAAGACATAATGGAAAAGATGTTGAAAACAACATTTATCATAAATTGTGCATCCTTAGGAATCCAGGTTTGTTATGTGGTTCTGGAAGATACATATGCGGCAAACATGCAGTCAAGAAACAAAACGATGGTGAATCCAGCAACCACCAAATTACCGTTCCGGCTGCTTCAACTCTAGGGCCTGATGTATTTTACATGGATAAGCCTATGGTTTTTACATATGAAGAAGTTTTGTACTCAACTGATGGTTTCTCTGATTCAAATCTGCTTGAACATGGAACATATGGTTCTATTTATTATGGTCTCCTTCGTGAGCAGGAAGTTGCAATTAAAAGAATGACAGCTACTAAAACTAAAGAATTTGTGTCAGAGATGAAAGTTCTGTGCAAGGTTCATCATACAAATCTGGTAGAATTGGTCGGCTATGCAGCTAGTCATGACGAGCTTTTCCTTATTTATGAATATGCTCAAAAGGGTTCACTTAGCAGCCATTTGCATGATCCTCAAAATAAGGGTAATTCATCACTTACTTGGATAACAAGGGTTCAGATTGTGCTTGATGCTGCCAGAGGCCTTGAATATATACATGAACATACAAAATCTCGTTATGTTCATCAAGCTATCAAGACAAGCAACATTTTACTTGATTCTTCCTTTAGAGCCAAGATATCAGCTTTTGGGTTAGCAGAACTTGTAGGTAACACAAATGAAGAAGAAACCAGAACCACCAATGTTGTCAGTGCATATGGATATCTTGCTCCAGAATACTTGTGCAATAATGGACTTGCGACGATCAAGAGTGATGTCTACGCATTTGGTGTTGTTCTTTTTGAGATTATATCCGGGAAGGAGGCCATTGTTCAAGTACAATGTTCGGAAAGACAATCACTGGCATCTACTATGTTGGGTGTTCTTAGGAATGTACCTGATTCCACGAGCATGTCAAGGATGAAAGATCACGTTGATCCTATTATGATGGATATGTATCCTCGTGATTGTGTATTTAAGATGGCCATGCTGGCAAAGCAATGCGTGGATGAAGATCCCATTTTACGTCCTGATATGAAGCAAGTTGTGATTTCCCTCTCAGAGAACCTGCTGTCTTCTGTTGAATGGGAAGCAACTCTAGCTGGGAAGAGCCAAGTTTTCAGTGGGCTTATTCAGGGAAGATAA 1956 0.3921 MNILTQKPHLKLLLRFHLFLLQLYCFYSYSTPMNCTETTRVCTSFLAFKPQSNQTVELIQSMFDVLPTDITIEGNGWDYVFIRKNCSCAYGVNKYLSNTTFTLKSNEGFVFEIVMDAYDGLAFFPNTTRWARKDSVIPLNLFCSCSTGLWNYLVSYVMRDGDSIESLASRFGVSMDSIETVNGIDDPDSVNIGSLYYIPLDSVPGEPYQLKNNSTPIPVPSPSVYNLSATHVHAHVPYGWMIGGLGVGLALIILSMILCMSLRHNGKDVENNIYHKLCILRNPGLLCGSGRYICGKHAVKKQNDGESSNHQITVPAASTLGPDVFYMDKPMVFTYEEVLYSTDGFSDSNLLEHGTYGSIYYGLLREQEVAIKRMTATKTKEFVSEMKVLCKVHHTNLVELVGYAASHDELFLIYEYAQKGSLSSHLHDPQNKGNSSLTWITRVQIVLDAARGLEYIHEHTKSRYVHQAIKTSNILLDSSFRAKISAFGLAELVGNTNEEETRTTNVVSAYGYLAPEYLCNNGLATIKSDVYAFGVVLFEIISGKEAIVQVQCSERQSLASTMLGVLRNVPDSTSMSRMKDHVDPIMMDMYPRDCVFKMAMLAKQCVDEDPILRPDMKQVVISLSENLLSSVEWEATLAGKSQVFSGLIQGR 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02745 651 Pfam Protein tyrosine and serine/threonine kinase 350 621 IPR001245 GO:0004672|GO:0006468
Car01g02745 651 Gene3D Phosphorylase Kinase; domain 1 321 416 - -
Car01g02745 651 Gene3D LysM domain 151 206 IPR036779 -
Car01g02745 651 SUPERFAMILY LysM domain 154 199 IPR036779 -
Car01g02745 651 SMART LysM_2 155 199 IPR018392 -
Car01g02745 651 SUPERFAMILY Protein kinase-like (PK-like) 323 622 IPR011009 -
Car01g02745 651 CDD LysM 154 198 IPR018392 -
Car01g02745 651 ProSiteProfiles Protein kinase domain profile. 345 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02745 651 PANTHER BNAA06G02020D PROTEIN 33 651 - -
Car01g02745 651 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 33 651 IPR044812 GO:0019199|GO:0045087
Car01g02745 651 Gene3D Transferase(Phosphotransferase) domain 1 418 636 - -
Car01g02745 651 Pfam LysM domain 156 193 IPR018392 -
Car01g02745 651 ProSiteProfiles LysM domain profile. 154 198 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02745 Car-Chr1 52843758 52847024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02745 32 651 Receptor kinase-like Gene Family AT1G51940 61.381 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Car01g02745 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02745 - - gmx:100796989 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02745 01 52843758 52847024 Car01g02745 01 52843758 52847024 ECH
Car01g02745 01 52843758 52847024 Car07g03158 07 58827406 58832866 PCT