Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02744 ATGATGGATGAAAGATCAAGAAATGAAAGAGAATCTTCTGAAGAAAGAAAGCTAGAGCTAAAGCTTGGTCCACCAAGTAGTGAAGATTGGTTTTACACCAACAAACTAAAAAATGAGTCATTACTATCTCTTGGAAACAATTACTTCTCAACAAACAATATTGTTCTTCCTTCATCATCATCATCATTTCTTAACTTCACATCAAATCAACCTATGAAGGGTAAAGATTCATTATCATCACAAACCTGTTCACCTAAGGTTGTAGAGTTACAGAATAGTGGTGATAACAAAGTACTATTCTCTCCCTCTTCTGTAAACAACACAGCTGTTTCCAACACTTCTCAGAAAAGAACTGCTCCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCGTTCAGGAAGAATCTTGCAAGCAGCAGCAATTCAAAGCCATCACCACCTGAGTCACATACTCAACACAACAAGGTTGTTGGTAAAAAAATTATTGAAAATTATGGTAAAGGTTTGTTTGTTAAAATCAACATGGATGGTGTTCCTATTGGGAGAAAAGTTGACCTTAATGCTTATGATAGCTATAAAAATCTCTCTTCGGCTGTCGATGAGCTTTTTAGAGGACTCCTTCAAGCTCAACGAGATTCCTCTTGTGGTAAGAAGAAGGAAGATGAAGAGAAAGTGATTAGAGGTATATTGGATGGAAGTGGAGAGTATACTCTTGTATATGAGGATAATGAAGGAGATAGGATGCTTGTTGGTGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTTCGAGTATTGAAGAGTTCTGAGCTTTCTGCTTTTACACTTGGTACTAAGCAAGACAAGATATCTACTTGA 864 0.3773 MMDERSRNERESSEERKLELKLGPPSSEDWFYTNKLKNESLLSLGNNYFSTNNIVLPSSSSSFLNFTSNQPMKGKDSLSSQTCSPKVVELQNSGDNKVLFSPSSVNNTAVSNTSQKRTAPGPVVGWPPIRSFRKNLASSSNSKPSPPESHTQHNKVVGKKIIENYGKGLFVKINMDGVPIGRKVDLNAYDSYKNLSSAVDELFRGLLQAQRDSSCGKKKEDEEKVIRGILDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGTKQDKIST 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02744 287 Pfam AUX/IAA family 18 275 IPR033389 -
Car01g02744 287 MobiDBLite consensus disorder prediction 133 152 - -
Car01g02744 287 Gene3D - 163 282 - -
Car01g02744 287 MobiDBLite consensus disorder prediction 1 25 - -
Car01g02744 287 ProSiteProfiles PB1 domain profile. 168 270 IPR000270 GO:0005515
Car01g02744 287 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 5 284 - -
Car01g02744 287 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 284 IPR003311 GO:0005634|GO:0006355
Car01g02744 287 MobiDBLite consensus disorder prediction 1 23 - -
Car01g02744 287 SUPERFAMILY CAD & PB1 domains 164 267 - -
Car01g02744 287 MobiDBLite consensus disorder prediction 107 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02744 Car-Chr1 52825860 52829793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02744 172 281 B3 DNA Binding Superfamily AT4G23980 34.545 6.40e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Car01g02744 AUX_IAA 2.9e-68 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02744 K14484 - gmx:100804593 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03157 07 58819551 58822170 Car01g02744 01 52825860 52829793 ECH
Car01g02744 01 52825860 52829793 Car01g02744 01 52825860 52829793 ECH
Car01g02744 01 52825860 52829793 Car07g03157 07 58819551 58822170 PCT