Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g02742 | ATGGGCAAGGCTACTAGGTGGTTGAAAGGGTTGTTTGGAATGAAGAAAGAGAAGGAACACAGTATCAAATCAGGATCATTGGTTCCAGAGAAGAAACAATCAGTGAAGGATGATCACATTGATCAGAATCATCATCACATTACTCAAACCAGTGATCAACCCTTTGATGATGATTGGTACAAATCCTATGTTGCTGAAAAACAGGATGAGTACAACAAACATGCAATTTTTGTGAGGTCCTTAAGTCATGGCAGAGGCACATTGTTATGTAGAAGCATGGAGTGGTGGGCTGCTGTAAAGATTCAATCTTTTTTCAGAGGATATTTGGCAAGAAAGGCTCATAGAGCACTAAAAGGACTAGTTAAAATACAAGCTCTTGTTAGAGGCTTCCTAGTTAGAAAAAGGGTTGCTGCAACACTTCACAGTATGCAAGCTCTAATGAGAGCTCAAGCCGTTATCCGGTTGCAACGAGCCCGTAATTCCATTGACAACAAGGAGAACATATCTCAATATGAAATCCGTCAAAGAAAACATGCGCAAATGTTTGATGAAACTAGAAATGAACAACACAAAAAATGGCTTAACAATTCCTCTAGTAGATTTGTTCAGAACCAGAAAATTGTTCTGATTGATCCTCACAGGTCTCATTCAAGATTTCGATGCGATGGTGCTACAATGTCTGACTGTGGAGATAATCTGCATCACTTCTATGAAGCAAATGCATCCTCTCTTCCTTATCAAATTCCCAGTCGAATATCGGTTCATGAATGTCAACATTCTCAAGATTCTGAATGGTGTTTCCATAATAATGTTAATGACCGCAAACTCTATACTGCTCATAGCACTCCTCGGTTATCGAATTCTTCGCAAGCGAATACTCCAGTGAAGAATGTTTCCGGAGATGCATTGTTCTCGCCTTACTCCAATTTTCCTAACTACATGGCTAATACTCATGCATCTAAGGCAAGAGTAAGATCTCTTAGTGCACCAAAGCAAAGACCTGAGATTAAGAAAAGGGTTCCACTTGATGAAATAATGGCTGCAAGAAATAGCATAAGTTGTGTTAGAAGGCATTGCTAA | 1080 | 0.3944 | MGKATRWLKGLFGMKKEKEHSIKSGSLVPEKKQSVKDDHIDQNHHHITQTSDQPFDDDWYKSYVAEKQDEYNKHAIFVRSLSHGRGTLLCRSMEWWAAVKIQSFFRGYLARKAHRALKGLVKIQALVRGFLVRKRVAATLHSMQALMRAQAVIRLQRARNSIDNKENISQYEIRQRKHAQMFDETRNEQHKKWLNNSSSRFVQNQKIVLIDPHRSHSRFRCDGATMSDCGDNLHHFYEANASSLPYQIPSRISVHECQHSQDSEWCFHNNVNDRKLYTAHSTPRLSNSSQANTPVKNVSGDALFSPYSNFPNYMANTHASKARVRSLSAPKQRPEIKKRVPLDEIMAARNSISCVRRHC | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g02742 | 359 | SMART | iq_5 | 93 | 115 | IPR000048 | GO:0005515 | |
| Car01g02742 | 359 | SMART | iq_5 | 116 | 137 | IPR000048 | GO:0005515 | |
| Car01g02742 | 359 | Gene3D | - | 58 | 119 | - | - | |
| Car01g02742 | 359 | Pfam | Protein of unknown function (DUF4005) | 283 | 353 | IPR025064 | - | |
| Car01g02742 | 359 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 349 | - | - | |
| Car01g02742 | 359 | PANTHER | IQ CALMODULIN-BINDING MOTIF PROTEIN | 1 | 349 | - | - | |
| Car01g02742 | 359 | ProSiteProfiles | IQ motif profile. | 118 | 145 | IPR000048 | GO:0005515 | |
| Car01g02742 | 359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 68 | 137 | IPR027417 | - | |
| Car01g02742 | 359 | Pfam | IQ calmodulin-binding motif | 97 | 115 | IPR000048 | GO:0005515 | |
| Car01g02742 | 359 | Pfam | IQ calmodulin-binding motif | 121 | 135 | IPR000048 | GO:0005515 | |
| Car01g02742 | 359 | ProSiteProfiles | IQ motif profile. | 97 | 122 | IPR000048 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car01g02742 | Car-Chr1 | 52786504 | 52789263 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car01g02742 | 1 | 356 | IQD Protein Family | AT3G16490 | 40.852 | 2.51e-68 | 218 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g02742 | - | - | gmx:100797296 | 350.517 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car01g02742 | 01 | 52786504 | 52789263 | Car01g02742 | 01 | 52786504 | 52789263 | ECH | |
| Car01g02742 | 01 | 52786504 | 52789263 | Car07g03155 | 07 | 58777510 | 58779954 | PCT |