Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02731 ATGGATAGTCTTATTTGGAATGACTCACAACAACTTGTAGTCAACAACAACATACCAAACTTGTGGAACACTCAACCACAAGACCTTGAAAGAGACTACTCAACTTCAAGTCTTCTTAATTATCAAATGAAAGACATAATAACTATGATACCAAACACAAATTCAGGAGCTGGAATCAGTTGTGAAGAAAATTTAATATTCCAATCATGCCCTTCCCTTTCAGCCAATTATGTGCAAGATTTCAACATGATCCACCAACAACATCTCATCAATGGCACACAAAACAACAAGGCTACTAAAATCTCTCTTGAATCACTTGATTGTTTGCTTTCAGCAACTAATAGTTATAACACTGACACTTCTGTTGAAGATGATGGAATCTCCATGATTTTTTCTGACTGCAGAAAAAACTTATTGAACTTAAGTTATTATGGCAGTGCAGTTTCCTCTGCTGAGTCTCAGAGTAATACTTCCAATCAAAGTTCATCAGATCAAGGTAAAATCATTGATTCTATAGTTCATTCCACAAAAAGGACTAATGATCATTATGATTATGATCCTTACTTCAGTATTACTCAGAATTCTTGTCCTAATGAAAGTGGTTTCAAGCTTATCTCAGAGAAACCACCAAAATCAAAGAAACCAAGATGGGATAATAAGTGTCCTGGCTCATCAAATATCAATTTCCAACAGCCGAATTCATCGACATTGTCGTCTACCATTGAAGAGCCTGATCCAGAGGCAATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCATTTAGGCCAGTGATGAATTTAGGTTTGGAAGAAGTGATGGAAAAGCCTAAAAGGAAGAATGTTAAAATATCAAAAGATCCACAAACTGTAGCTGCAAGGCAAAGAAGGGAAAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTTCCTGGTGGAACAAAGATGGACACTGCATCAATGCTTGATGAAGCTGCTAATTACCTCAAGTTTCTTAGATCACAAGTCAAAGCATTAGAAAATCTTGGAAACAAGATTGATGCAATGAATAATAATTTTCCTCCTACAAGTATAGCCTTCTCTTTCAACCCTTTAAATCCCATGCAAACTCATTTTCCCATCCAAAACTCTAATAATCACAACATCCAATATTCCAAGGGTTGA 1167 0.3599 MDSLIWNDSQQLVVNNNIPNLWNTQPQDLERDYSTSSLLNYQMKDIITMIPNTNSGAGISCEENLIFQSCPSLSANYVQDFNMIHQQHLINGTQNNKATKISLESLDCLLSATNSYNTDTSVEDDGISMIFSDCRKNLLNLSYYGSAVSSAESQSNTSNQSSSDQGKIIDSIVHSTKRTNDHYDYDPYFSITQNSCPNESGFKLISEKPPKSKKPRWDNKCPGSSNINFQQPNSSTLSSTIEEPDPEAIAQMKEMIYRAAAFRPVMNLGLEEVMEKPKRKNVKISKDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRSQVKALENLGNKIDAMNNNFPPTSIAFSFNPLNPMQTHFPIQNSNNHNIQYSKG 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02731 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 333 IPR011598 GO:0046983
Car01g02731 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 288 345 IPR036638 GO:0046983
Car01g02731 388 MobiDBLite consensus disorder prediction 219 241 - -
Car01g02731 388 Pfam Helix-loop-helix DNA-binding domain 294 333 IPR011598 GO:0046983
Car01g02731 388 Coils Coil 323 353 - -
Car01g02731 388 MobiDBLite consensus disorder prediction 200 241 - -
Car01g02731 388 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 16 384 IPR045843 GO:0003700|GO:0006355
Car01g02731 388 PANTHER TRANSCRIPTION FACTOR BHLH87 16 384 - -
Car01g02731 388 Gene3D - 284 353 IPR036638 GO:0046983
Car01g02731 388 SMART finulus 290 339 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02731 Car-Chr1 52708233 52709399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02731 71 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.497 1.60e-83 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car01g02731 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02731 - - gmx:100793830 427.557