Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02718 ATGGACAAAAAGCCTGAGCTCATCCATGGAACAATTGAAGCTACCATCTTCAATGCAACTCCTTACTCCCCTTCATTTCCATTCAATTGTTTATTTATTAATGGAAAGCCTGCTTATGTGACCATCAAGATAGACAACAAGAAGGTGGCAAAAACAACACAAGAAAGTGAACGTGTTTGGAACCAAACATTTCAGATTCATTGTGCTCATCTAGCTGATTCAGCTATCACCATTACACTGAAAACATCATGTTCCATATTAGGAAAACTCCACATCAAGGCACAACAGTTGAAAGAAGAGAGTTTGATCAATGGATTCTTCCCTCTCCTCATGGAAAATGGTAAACAAATTCCGGAACTAAAATTAAGGTTTATGTTATGGTTCAAGCCAGCAAATTCAGAACCAAGTTGGTCAAAAGTACTTAGTAGTGAGGAGTTTCACGGGATGAGGGATGCTACATTCCCACAAAGGTCTAATTGTCATGTTAAGCTCTACCATGATGCTCACCACTCATCTACTTTCCAACCTCCTTTTGATATATGTGGAGTTCCAACAAAGCTATGGGAAGATGTTTATAAAGCTATTGAGGGTGCAAAATATTTAGTATATATTGCAGGCTGGTCTTTCAATCCTAACATGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCACATGCTAGAGAAACAAAGTTGGGTGAGCTATTGAAGAAGAAAGCAGAAGAAGGAGTAGCTGTGAGAATTATGATTTGGGATGATGAAACATCATTGCCTTTTATCAAGAACAAAGGTGTAATGAACACACATGATGAGGATGCTTTTGCTTACTTCAAACACACAAAAGTAGTATGCAGAAAGTGTCCAAGATTACATCACAAATTCCCAACAATATTTGCTCATCATCAGAAGACAGTGACTGTGGACAGCAAAACTCCTAACTCTGTCAATGACAGAGAAATTATGAGCTTTTTAGGTGGTTTAGATGTGTGTGATGGTCGATACGATACCGAGAAACATTCATTGTTTCAAACACTTACTGAGGAATCACATTACCATGATTTCTACCAAACAAATATTGCAGGAGCTAGCCTCAACAAAGGAGGTCCTAGAGTGCCATGGCATGATGCTCATGCTTGTGTTACCGGCAAGGTTGCTTGGGATGTTTTAACCAATTTTGAACAAAGATGGACAAAACAATGTGACTCATCTCTTCTTGTCCCTGCAAACACCTTAGAAAATCTCATTCCTATTTGCTCAACAAATCCTTCCACCGAAAGGAATTGGAAAGTACAAGTATATCGGTCGATTGACCATGTCTCAGCTAGCCAACTGTTTAGAAAGCTAACTGTTGAGAGTAGCATTCATGAAGCTTATGTCGAAGCAATTAGACGAGCTGATAGGTTTGTGTACATTGAAAACCAGTATTTCATTGGAGGGTGTCATTTGTGGCAGAAAGATAACAACAGTGGCTGCAGAAATTTGATACCTATTGAGATTGCACTCAAGGTGGTCAGCAAGATTAAAGCAAGAGAAAGGTTTGCAGTGTACATAGTCATACCAATGTGGCCAGAAGGAGTACCTGAAAGTGAACCAGTTCAAGATATACTACATTGGACTAGAGAAACAATGACAATGATGTATAAGTTGATCGGAGAAGCAATAATAGAAAGTGGAGAACCAGAACATCCAAGAGACTACTTGAATTTCTTTTGCCTTGCAAATAGGGAAAAAAAGGAAAATGAAGAGTATCATCCTCCACATTCTCCTCATATTGAAACTCAATATTGGAATGCACAGAAAAATAGAAGATTTATGGTTTATGTTCACTCCAAGCTCATGATAGTGGACGACCTATACATATTAATAGGATCAGCAAATGTGAACCAAAGATCGATGGACGGACAAAGGGACACCGAGATTGCAATAGGAGGCTACCAGTCTCAAGATGGAGTTGATCACTGCATGAGTCAAGGTGATATTCATGCATACAGAATGTCACTATGGTATGAGCACACTGGTAGTGCTGAGAAGTTGTTCCTAGAGCCAGAAAGTTTGGAATGTGTGCAGAGAGTGTGCTCAATAGGAGACAAAATGTGGAAAATTTACAGTAGTAAAGAAATAGTGGACATGGAAGGTGTGCACCTTGTAACTTATCCTGTGATAGTAACACAAGATGGATCTGTTGAGGACCTAACTAATGGTGAGGATCATTTTCCTGATACAAAATCTCTAGTGAAGGGAAGAAGATCAAAATTATTACCACCTATCATTACGACTTAG 2277 0.39 MDKKPELIHGTIEATIFNATPYSPSFPFNCLFINGKPAYVTIKIDNKKVAKTTQESERVWNQTFQIHCAHLADSAITITLKTSCSILGKLHIKAQQLKEESLINGFFPLLMENGKQIPELKLRFMLWFKPANSEPSWSKVLSSEEFHGMRDATFPQRSNCHVKLYHDAHHSSTFQPPFDICGVPTKLWEDVYKAIEGAKYLVYIAGWSFNPNMVLVRDPQTEIPHARETKLGELLKKKAEEGVAVRIMIWDDETSLPFIKNKGVMNTHDEDAFAYFKHTKVVCRKCPRLHHKFPTIFAHHQKTVTVDSKTPNSVNDREIMSFLGGLDVCDGRYDTEKHSLFQTLTEESHYHDFYQTNIAGASLNKGGPRVPWHDAHACVTGKVAWDVLTNFEQRWTKQCDSSLLVPANTLENLIPICSTNPSTERNWKVQVYRSIDHVSASQLFRKLTVESSIHEAYVEAIRRADRFVYIENQYFIGGCHLWQKDNNSGCRNLIPIEIALKVVSKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIIESGEPEHPRDYLNFFCLANREKKENEEYHPPHSPHIETQYWNAQKNRRFMVYVHSKLMIVDDLYILIGSANVNQRSMDGQRDTEIAIGGYQSQDGVDHCMSQGDIHAYRMSLWYEHTGSAEKLFLEPESLECVQRVCSIGDKMWKIYSSKEIVDMEGVHLVTYPVIVTQDGSVEDLTNGEDHFPDTKSLVKGRRSKLLPPIITT 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02718 758 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 124 IPR035892 -
Car01g02718 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 603 630 IPR001736 GO:0003824
Car01g02718 758 Pfam Phospholipase D Active site motif 606 630 IPR001736 GO:0003824
Car01g02718 758 SMART pld_4 603 630 IPR001736 GO:0003824
Car01g02718 758 SMART pld_4 295 332 IPR001736 GO:0003824
Car01g02718 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 295 332 IPR001736 GO:0003824
Car01g02718 758 SUPERFAMILY Phospholipase D/nuclease 147 406 - -
Car01g02718 758 Gene3D Endonuclease Chain A 416 652 - -
Car01g02718 758 PANTHER PHOSPHOLIPASE D ALPHA 4 758 - -
Car01g02718 758 Pfam Phospholipase D C terminal 675 747 IPR024632 -
Car01g02718 758 SUPERFAMILY Phospholipase D/nuclease 419 687 - -
Car01g02718 758 PANTHER PHOSPHOLIPASE D 4 758 IPR015679 -
Car01g02718 758 Gene3D Endonuclease Chain A 182 415 - -
Car01g02718 758 PIRSF PLD_plant 7 758 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Car01g02718 758 Pfam C2 domain 38 109 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02718 Car-Chr1 52610182 52613746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02718 30 758 Phospholipase D Gene Family (Wang group) AT1G55180 62.180 0.0 968
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02718 K01115 - gmx:100807431 1353.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02718 01 52610182 52613746 Car01g02718 01 52610182 52613746 ECH
Car01g02718 01 52610182 52613746 Car07g03116 07 58337255 58341774 PCT