LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car01g02714	ATGAGCCGCTACGATAGCCGTTCCGCCGACCCCACTTCGTACCGCGACCGGAGAAGTGACTCGGCCCTAGGTGGAGCTGCTTTTGCTGCACCTTCAACCAGAAAGGACTACGATGAGGGTGCGTCAGGTTCTCCCACCAGGAAAATTAATTTGGATGGATTGCCTCATTTTGAGAAAAACTTCTACAACGAATCTCCCTCTGTTCGTGCTATGACCGAGGCTGAGGTTAACGAGTATCGTCTACGCCGTGAAATCACCGTTGAAGGCAAAGATGTCCCTAAACCTGTTCAATCCTTTTCCGATGCTGCTTTTCCAGACTATGTATTGCAAGAAGTTAAGAAAGCTGGTTTTGTTGAACCTACACCTATTCAGTCCCAAGGTTGGCCAATGGCTTTGAAGGGACGTGATCTGATAGGAATTGCAGAGACAGGATCAGGGAAGACGCTGGCTTACTTGTTGCCTGCCATAGTGCATGTTAATGCTCAGCCAATTCTAGATCCTGGGGATGGACCTATTGTGTTAGTTTTGGCCCCAACACGTGAACTTGCCGTCCAAATACAACAAGAGGCTACTAAATTTGGTGCATCATCGAGGATTAAGAGCACATGCATATATGGTGGGGTGCCAAAAGGGCCTCAAGTGCGCGATCTCCAGAAAGGCGTTGAAATCGTAATTGCCACTCCGGGAAGGTTAATTGATATGCTCGAGTCAAATCATACTAACTTGCGAAGGGTCACATACCTGGTATTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATACGGAAAATTGTCTCTCAGATTCGTCCAGACCGACAAACTTTGTACTGGAGTGCTACTTGGCCAAAGGAGGTCGAACAGTTGGCAAGGCAGTTCCTTTATAATCCATACAAAGTAATTATAGGTTCTGAAGAATTAAAAGCTAACCATGCTATAAAGCAATATGTTGACATTGTTCCTGAAAAGCAAAAATATGATAAATTGGTAAAGTTATTGGAGGACATCATGGATGGAAGCCGAATATTGATATTCATGGATACTAAAAAGGGATGTGATCAGATAACTAGGCAGCTCCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTGCTTTCAGAGTTTAAATCCGGAAAGAGTCCTATAATGACTGCAACAGATGTTGCCGCTCGTGGTTTAGATGTGAAGGATGTGAAGTACGTGATAAATTATGACTTCCCGGGATCACTGGAGGATTATGTTCACCGCATTGGAAGGACTGGGAGAGCTGGTGCGAAAGGAACTGCATACACATTCTTCACAGCAGCTAATGCCAGATTTGCAAAGGAACTAGTAAGCATACTTGAGGAAGCTGGACAGAGAGTGAGTCCTGAATTGGCAGCAATGGGGCGTGGTGCACCTCCTCCACCTTCAGGAGGCTTCCGAGACCGTGGGAAGGGTTTTGGCAGCGGTCGCCCGTGGAACTGA	1506	0.4635	MSRYDSRSADPTSYRDRRSDSALGGAAFAAPSTRKDYDEGASGSPTRKINLDGLPHFEKNFYNESPSVRAMTEAEVNEYRLRREITVEGKDVPKPVQSFSDAAFPDYVLQEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSEELKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELVSILEEAGQRVSPELAAMGRGAPPPPSGGFRDRGKGFGSGRPWN	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car01g02714	501	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	28	487	-	-
	Car01g02714	501	PANTHER	LD32873P	28	487	-	-
	Car01g02714	501	Gene3D	-	309	474	IPR027417	-
	Car01g02714	501	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	128	303	IPR014001	-
	Car01g02714	501	Gene3D	-	60	307	IPR027417	-
	Car01g02714	501	CDD	DEADc_DDX5_DDX17	108	303	-	-
	Car01g02714	501	MobiDBLite	consensus disorder prediction	1	50	-	-
	Car01g02714	501	MobiDBLite	consensus disorder prediction	471	501	-	-
	Car01g02714	501	Pfam	DEAD/DEAH box helicase	121	292	IPR011545	GO:0003676\|GO:0005524
	Car01g02714	501	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	249	257	IPR000629	-
	Car01g02714	501	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	331	476	IPR001650	-
	Car01g02714	501	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	169	452	IPR027417	-
	Car01g02714	501	SMART	ultradead3	116	319	IPR014001	-
	Car01g02714	501	Pfam	Helicase conserved C-terminal domain	328	437	IPR001650	-
	Car01g02714	501	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	97	125	IPR014014	GO:0003724
	Car01g02714	501	SMART	helicmild6	356	437	IPR001650	-
	Car01g02714	501	MobiDBLite	consensus disorder prediction	1	17	-	-
	Car01g02714	501	CDD	SF2_C_DEAD	316	446	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car01g02714	Car-Chr1	52591991	52597813	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car01g02714	84	457	Eukaryotic Initiation Factors Gene Family	AT3G19760	34.667	6.38e-78	248

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car01g02714	K12823		-	gmx:100790464	899.812