Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02705 ATGaacaacaataaccataacaataatcacaacaacaacTCAAGAAACGGCAACGGAACCACACAGGCTTGTGCTGCTTGTAAATACCAACGTAGGAAGTGCGGTCCAACCTGCATCCTAGCACCATATTTTCCTCACGATCGTCAACAGCAATTCTTGAATGCCCATAAATTATTTGGTGTTGGTAAAATCACCAACATGATCAAGAATGTTCCGCCTAACCTTAGAGGCGCAACCATGAGTACAATTATGTATCAATCTGATTTGCGTGCTCTTGACCCTGTTGGTGGTTGTTATGGACAAATTCAACAGCTTCAATCTCAGATTGAATTTTTCAATTCTGAGCTTCTTTTCACCCTTCAACAACTTGCTCTTTTTAGAGGCCAAGTTCATAATAACAATGCTAATCGTCATCATCATCATCATCCTCAATATGGCATCATTAATAATAATATTATTCCTCAACCCGCCCAAGTACTAAATCAATCTCAACAGCACCAGCATTATGCTGATGAAATGAGTATGTCacaaccacaacaacagcaactacaTGATGATGTCAACAACCTCAATCTCAATCCAAATTATGTTCCTTTACAAGAGGACCTTAATACGTGGGTCGATTCTATACCGTTGTCGCCATTAACGTTGCAGGATaacagaaaggaggaagaagatgaacaagaacaagaacaGtga 699 0.3433 MNNNNHNNNHNNNSRNGNGTTQACAACKYQRRKCGPTCILAPYFPHDRQQQFLNAHKLFGVGKITNMIKNVPPNLRGATMSTIMYQSDLRALDPVGGCYGQIQQLQSQIEFFNSELLFTLQQLALFRGQVHNNNANRHHHHHPQYGIINNNIIPQPAQVLNQSQQHQHYADEMSMSQPQQQQLHDDVNNLNLNPNYVPLQEDLNTWVDSIPLSPLTLQDNRKEEEDEQEQEQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02705 232 Coils Coil 215 232 - -
Car01g02705 232 MobiDBLite consensus disorder prediction 162 181 - -
Car01g02705 232 Pfam Lateral organ boundaries (LOB) domain 23 116 IPR004883 -
Car01g02705 232 ProSiteProfiles LOB domain profile. 22 123 IPR004883 -
Car01g02705 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 19 229 - -
Car01g02705 232 PANTHER LOB DOMAIN PROTEIN 19 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02705 Car-Chr1 52528761 52530059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02705 22 143 AS2 family AT3G13850 63.115 5.31e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Car01g02705 LOB 3.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02705 - - mtr:MTR_2g100020 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02705 01 52528761 52530059 Car07g03100 07 58160604 58162100 PCT