Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02703 ATGTCTAATTTGACTTCTGCATCTGGTGAAGCGAGTGCTAATTCTTCAGCCAACATAATTGAAAACTTTTCTGCTCAACAAACTCAAACTCATGATGAAGCTCCTTCTAAGAAAAGGAGAAATCTTCCTGGCAATCCAGACCCAGAAGCTGAAGTTATAGCTTTATCACCAAAGACACTTATGGCAACAAACAGATTCATTTGTGAGATCTGTAAGAAAGGATTTCAAAGAGAACAGAATCTTCAACTTCATAGAAGAGGACACAATTTACCATGGAAGTTGAAGCAAAGAACAAACAATGAGATAATTAGGAAGAAAGTTTATGTGTGTCCAGAAGCAACATGTGTGCACCATGAAGCATCAAGAGCCTTAGGAGACCTAACTGGTATCAAGAAGCACTTTTCAAGAAAGCACGGTGAGAAGAAGTGGAAATGTGAGAAATGCTCTAAGAAGTATGCAGTTCAATCAGATTGGAAAGCTCACTCAAAAACATGTGGTACAAGAGAATACAAATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACACACAGAGCTTTCTGTGATGCATTAGCAGAGGAAAGTTCAAATTCAAAGGGTTTGATGAATCAAGTTTTGCCATTAAAGAAAGAGCATGAAAATATAAACTTTTTAATAAGAGAACAAGAAATAGAAATACCCTGTTGGCTTGGTGAATCTTTAAGCATCCATGAAAACCCTAACCCTAGAAATACACTTCcatcatcatcatcatcttcacctcacatGTCAGCTACAGCATTGTTGCAGAAAGCAGCACAGATGGGTGCTAAAACCTCATCACAATCACAAACATTCATCAGTGGGACCCACCAACATGGTCACGTGTCTCTTGTTGACTTTGTcaaaaacaacaacaacaacaTGGTAACCTCAAATGTTAATTTTGGTTTGAGTATGTGTgaagaagaagaagaagaaATGATACTTAATGATCATCATGCTTTCATCATAAACTCTTTCACTTCCTTTAATGAGGATGCTTTTGCTGGGAATATTCTTAATTCAAAAAATGATAATGGAGGAAGTGATGGATTTACAAGAGATTTTTTGGGTCTTAAACCTCTATCTCATAGTGATATAGTACTTATGGAAAATTGCATCAAatcttcttcttcttcttcttctcatcatcaACAAAAACCTTCTCAAGGTATGGCACACCTCGAGACCAAGGCACTACAACCCCAACTAGATGCACCAGACACTAACTAA 1263 0.3492 MSNLTSASGEASANSSANIIENFSAQQTQTHDEAPSKKRRNLPGNPDPEAEVIALSPKTLMATNRFICEICKKGFQREQNLQLHRRGHNLPWKLKQRTNNEIIRKKVYVCPEATCVHHEASRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESSNSKGLMNQVLPLKKEHENINFLIREQEIEIPCWLGESLSIHENPNPRNTLPSSSSSSPHMSATALLQKAAQMGAKTSSQSQTFISGTHQHGHVSLVDFVKNNNNNMVTSNVNFGLSMCEEEEEEMILNDHHAFIINSFTSFNEDAFAGNILNSKNDNGGSDGFTRDFLGLKPLSHSDIVLMENCIKSSSSSSSHHQQKPSQGMAHLETKALQPQLDAPDTN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02703 420 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Car01g02703 420 MobiDBLite consensus disorder prediction 387 402 - -
Car01g02703 420 SMART c2h2final6 66 88 IPR013087 -
Car01g02703 420 SMART c2h2final6 108 138 IPR013087 -
Car01g02703 420 SMART c2h2final6 143 163 IPR013087 -
Car01g02703 420 Gene3D Classic Zinc Finger 101 191 - -
Car01g02703 420 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Car01g02703 420 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 208 - -
Car01g02703 420 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 235 376 - -
Car01g02703 420 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 208 - -
Car01g02703 420 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 235 376 - -
Car01g02703 420 MobiDBLite consensus disorder prediction 1 31 - -
Car01g02703 420 Gene3D Classic Zinc Finger 62 89 - -
Car01g02703 420 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Car01g02703 420 MobiDBLite consensus disorder prediction 1 49 - -
Car01g02703 420 MobiDBLite consensus disorder prediction 387 420 - -
Car01g02703 420 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02703 Car-Chr1 52503885 52508252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02703 1 389 IDZ Gene Family AT1G55110 49.658 1.27e-126 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car01g02703 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02703 K25870 - cam:101511798 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02703 01 52503885 52508252 Car07g03097 07 58137663 58140939 PCT