Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02687 ATGGCAGGTTTGGCTCCGGACGGTTCACAATTTGATGCTAAGCAGTATGACTCTAAGATGAACGAATTGCTTACTGATGGACAAGAATTTGGCGTCGAATATGATGAAGTCTATGATACTTTTGATGCAATGAAATTGGAAGAAAATCTTCTTAGAGGCATATATGCTTATGGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTTTAGATGTGATTCAGCAGGCTCAGTCTGGAACAGGGAAGACAGCAACATTCTGTTCTGGAATTTTACAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGTTGGCACAGCAGATTGAGAAGGTTATGCGTGCTCTTGGTGATTACCTTGGTGTTAAGGTTCATGCTTGTGTTGGTGGAACCAGCGTTCGTGAGGATCAGCGTATTCTCCAAGGTGGTGTCCACACTGTTGTGGGCACTCCTGGACGTGTGTTTGACATGCTGCGACGACAGTCTCTTCGGCCAGAGTACATTAAAATGTTTGTTTTGGACGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTACGACATCTTCCAGCTTCTGCCTCCCAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCCGAAGCCCTGGAGATCACAAGGAAGTTCatgaacaagccagtgagaatcctggtaaagcgtgatgaattgacccttgagggtatcaagcaattttatgtcaatgttgacaaggaagagtggaaactggagacattatgtgacctttatgagacactggctatcactcagagtgtcatttttgtgaacacaaggcgcaaggTGGACTGGCTCACTGACAAAATGCGAGGGAATGACCACACTGTCTCAGCCACCCATGGAGACATGGACCAAAACACTCGTGATATCATCATGCGTGAATTTCGCTCAGGCTCTTCTCGAGTTCTCATTACCACTGACCTTTTGGCCCGTGGTATTGATGTTCAACAAGTGTCTTTGGTGATAAACTATGATCTTCCTACTCAACCTGAAAATTATCTTCATCGCATAGGGCGAAGTGGTCGTTTTGGTAGAAAAGGTGTTGCAATAAACTTTGTCACATTGGATGATGCAAGAATGCTTTCTGATATTCAGAAGTTCTACAATGTGACCGTAGAGGAGTTGCCTTCAAATGTTGCTGATCTACTCTGA 1239 0.3866 MAGLAPDGSQFDAKQYDSKMNELLTDGQEFGVEYDEVYDTFDAMKLEENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQGGVHTVVGTPGRVFDMLRRQSLRPEYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVTVEELPSNVADLL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02687 412 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 240 IPR014001 -
Car01g02687 412 PANTHER RNA HELICASE 23 412 - -
Car01g02687 412 Gene3D - 29 247 IPR027417 -
Car01g02687 412 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 412 - -
Car01g02687 412 Pfam DEAD/DEAH box helicase 64 225 IPR011545 GO:0003676|GO:0005524
Car01g02687 412 CDD DEADc_EIF4A 43 241 - -
Car01g02687 412 SMART ultradead3 58 255 IPR014001 -
Car01g02687 412 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 39 67 IPR014014 GO:0003724
Car01g02687 412 SMART helicmild6 292 373 IPR001650 -
Car01g02687 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 393 IPR027417 -
Car01g02687 412 Pfam Helicase conserved C-terminal domain 265 373 IPR001650 -
Car01g02687 412 CDD SF2_C_DEAD 252 382 - -
Car01g02687 412 Gene3D - 248 412 IPR027417 -
Car01g02687 412 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 251 412 IPR001650 -
Car01g02687 412 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 186 194 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02687 Car-Chr1 52397782 52400850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02687 1 412 Eukaryotic Initiation Factors Gene Family AT1G72730 87.923 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02687 K03257 - gmx:100777628 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02687 01 52397782 52400850 Car07g03078 07 57936249 57939819 PCT