Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02686 ATGGGAAATCAGAAGCAGAAGTGGACGGCTGAAGAAGAAGACGCGTTGCAACGTGGCGTCCAGAAGTACGGTGCCGGAAAGTGGAAGAACATTCTCAGAGACCCTGATTTCTCTCGTTCCCTCGCTATCCGTTCCAACATTGATCTCAAGGATAAATGGCGGAATTTAAATGTTTGCCCTGGTCAAAGTTCTAAAGATAAGTCTAGGACTCCCAAAATCAAACCATTGGTtcctgctcctgcttcaccttcacttgctccatctccagttcctactctgcCAAATGTTACTCCTTCACctcaaactcaaactcagactcaggctcctactcagactcccactcccactcCACAGCCTTCTCACAATGATGACGATGCCAAAACTCATCCAAAGTACAATGCAATGATTTTCGAAGCTTTATCAACAATCAAAGATACCAATGGTTCTGACTTAAATGCTATTGTTAGCTTCATTGAGCAAAAGCACAACTTCCCTCAAAATCAAAATTTCAGAAGGACGTTAGGTACAAAGTTAAGAAGGCTTGTCAGTCAAGGGAAACTTGAGAAGGTACAAAATTGTTATAAGATAAAGGACACCACAGTGGTGACGAAGTCAGCTGATGACCCAAAATCACCTACAGCAAAAGAAATGGATTCGCCAGCATCATCTGGTATTTCTAAATATGATGAGGCAATGAAGGAAGCTGCTGAAACTGTAGCCTACAGAATTGCTGATGCGGAGAATAAGTCATTTTTGGCTGCTGCTGCAGTCAAGGAGACGGAAAGATATGCAAAGTTTGTTGAGGAGAATGATGTAATGTTAAAGTTTGCGGAAGAGCTTTTAGCAAAATGCAAGCTTGGTGGAAGTGTCCGTTTTGCTTAA 882 0.3673 MGNQKQKWTAEEEDALQRGVQKYGAGKWKNILRDPDFSRSLAIRSNIDLKDKWRNLNVCPGQSSKDKSRTPKIKPLVPAPASPSLAPSPVPTLPNVTPSPQTQTQTQAPTQTPTPTPQPSHNDDDAKTHPKYNAMIFEALSTIKDTNGSDLNAIVSFIEQKHNFPQNQNFRRTLGTKLRRLVSQGKLEKVQNCYKIKDTTVVTKSADDPKSPTAKEMDSPASSGISKYDEAMKEAAETVAYRIADAENKSFLAAAAVKETERYAKFVEENDVMLKFAEELLAKCKLGGSVRFA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02686 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Car01g02686 293 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Car01g02686 293 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 128 198 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car01g02686 293 MobiDBLite consensus disorder prediction 97 121 - -
Car01g02686 293 PANTHER SINGLE MYB HISTONE 4 1 291 IPR044597 GO:0003691
Car01g02686 293 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 291 - -
Car01g02686 293 CDD SANT_TRF 6 57 - -
Car01g02686 293 SMART sant 4 59 IPR001005 -
Car01g02686 293 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Car01g02686 293 SUPERFAMILY "Winged helix" DNA-binding domain 127 205 IPR036390 -
Car01g02686 293 Gene3D - 124 219 IPR036388 -
Car01g02686 293 MobiDBLite consensus disorder prediction 52 128 - -
Car01g02686 293 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Car01g02686 293 CDD H15 126 190 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car01g02686 293 MobiDBLite consensus disorder prediction 204 225 - -
Car01g02686 293 Gene3D - 8 81 - -
Car01g02686 293 MobiDBLite consensus disorder prediction 76 96 - -
Car01g02686 293 Pfam linker histone H1 and H5 family 129 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car01g02686 293 SMART h15plus2 126 193 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02686 Car-Chr1 52385573 52389525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02686 1 287 Single Myb Histone (SMH) Gene Family AT1G17520 45.215 5.64e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car01g02686 Linker_histone 8.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02686 K09422 - gmx:778177 278.1