Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02680 ATGGAAGCACGAGGTCGTTCCGTTGAAGAAATTTTTGAGGATTTCAAAAGCCGAAGAGCTGGCATCATCAAAGCCCTTACCCTAGATGTTGAAGATTTCTACAGACAATGTGATCCTGAGAAGGAGAATTTGTGTTTATATGGGTTACTTAATGAGAAGTGGGAAGTGAATTTACCTGTTGAAGAAGTTCCACCAGAGCTTCCTGAGCCTGTGCTAGGTATCAACTTTGCTAGGGATGGCATGCAAGAAAAAGATTGGTTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTTCCCTTGCATTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGTCTATTCAATATGATTAATGAACTACCAACAGTATTTGAAGTTGTTACTGGTGCAAATACAACAAAGAAACAAGTGAAAGAGAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCTAAGTCCAGTTCTAAAGCGCGGGCTCCTGAAACTCAGAGCAGACAACCAAAGGCATTACAATCAAAAgacgaggacgaagaacttgaagaacaagaggatgatgaacatggagatgCCTTGTGTGGGGCTTGTGGTGATAACTATGGTGCTGACGAGTTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACTCCTGCACGGGCAGAGCATATCAAGCAATACAAGTGCCCGTCATGCAGTAACAAGAGAGCTCGCTAG 753 0.3931 MEARGRSVEEIFEDFKSRRAGIIKALTLDVEDFYRQCDPEKENLCLYGLLNEKWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSLAFYFGARFGFDKADRKRLFNMINELPTVFEVVTGANTTKKQVKEKSSVSNNSGSKSKSSSKARAPETQSRQPKALQSKDEDEELEEQEDDEHGDALCGACGDNYGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02680 250 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 250 - -
Car01g02680 250 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Car01g02680 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
Car01g02680 250 Pfam PHD-finger 198 247 IPR019787 -
Car01g02680 250 SMART PHD_3 197 245 IPR001965 -
Car01g02680 250 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Car01g02680 250 MobiDBLite consensus disorder prediction 141 191 - -
Car01g02680 250 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Car01g02680 250 PANTHER CPG BINDING PROTEIN 1 250 IPR045104 GO:0006355|GO:0042393
Car01g02680 250 CDD PHD_AL_plant 197 247 IPR044104 -
Car01g02680 250 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Car01g02680 250 MobiDBLite consensus disorder prediction 141 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02680 Car-Chr1 52336769 52341250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02680 6 250 Alfin-like Transcription Factor Family AT3G42790 72.245 2.86e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Car01g02680 Alfin 6.7e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02680 - - gmx:100794662 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02680 01 52336769 52341250 Car07g03063 07 57647116 57650898 PCT