Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02679 ATGAAGTGCTTATGTGAGAAAGACTCTGGTCTATGTTCTGCTCATTCAACATCCCACCATGTTTTTGGATGCCCATCATGGGGAACTTCTTCTGAATCTGAAGTCCAACAAACATCTATGTCCAAAACTTTGAGCTTGAAAGTTGATGCTATTCCACAAAAATGCCTCAAGAGTAAGGCACTGAGTTTTCAATTCCAAGAACACGATTCTTCTTCAACTCAGTCGTCTGGTCAATCTTATCCTGAAGTTGGCTCACCACAATCAGGTCAAATTCCTTTCCAGCATAGTTCTTCAACCAGTTCAACGTTTAAGATAACCGAGGGGAATGACATGGGATGTCTCATCGAGACGTCTATTGGGAGTCCAAATCTCACCATCCATCCTCCACCAATGGATCACAGCCAATCACTTGCGCATTTTGCATTCCACTTTGCTGATCCATGCTACAGTGGCCTACTGGCTGCTTCATATGGTCCACAGTATAAGTTATTGGGAACTGCTGCTCCTGTTCGTATTCCTCTGCCATCTGATCTTGCAGAAGAACCGATATTTGTGAATTCCAAGCAGTACCATGCTATTATGAGGCGAAGACAATGTCGAGCAAAACTTGAAGCACATAACAAACTCATCAAAGATCGTAAACCATATCTTCATGAGTCCCGCCATGTACATGCATTAAAGAGAGCTAGAGGTGCCGGTGGCCGTTTTCTCAACGCTAAAAAGCTCCAAGAATCAAAGCTAGATTCACCAAACCATGGCCAAAAAAGTGTTTCCAACTATACTTGTTTGAATTTGAATGGAAATATGGTAGAATCTAAAATGCATGATGAGGTTGAAAACTACAGAGATGGTGCTTCATATGCATCCAATAGGAATGAAATGTTGGAGCAGCAAGAGGAGTTAGAGTTCAGGCTATGCAGTTACCCTTCTTCTCAGAGTGGAAGGAACATGCAAGATTATACAGCTGACAAGGGTGTTGGTGCGAATGAACGCCGACACCGACTATCGGTCCTCATGTGA 1020 0.4294 MKCLCEKDSGLCSAHSTSHHVFGCPSWGTSSESEVQQTSMSKTLSLKVDAIPQKCLKSKALSFQFQEHDSSSTQSSGQSYPEVGSPQSGQIPFQHSSSTSSTFKITEGNDMGCLIETSIGSPNLTIHPPPMDHSQSLAHFAFHFADPCYSGLLAASYGPQYKLLGTAAPVRIPLPSDLAEEPIFVNSKQYHAIMRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLQESKLDSPNHGQKSVSNYTCLNLNGNMVESKMHDEVENYRDGASYASNRNEMLEQQEELEFRLCSYPSSQSGRNMQDYTADKGVGANERRHRLSVLM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02679 339 ProSitePatterns NF-YA/HAP2 subunit signature. 184 204 IPR018362 GO:0003677|GO:0016602
Car01g02679 339 MobiDBLite consensus disorder prediction 67 101 - -
Car01g02679 339 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 21 298 - -
Car01g02679 339 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 181 236 IPR001289 GO:0003700|GO:0006355
Car01g02679 339 Gene3D - 179 240 - -
Car01g02679 339 MobiDBLite consensus disorder prediction 309 339 - -
Car01g02679 339 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700|GO:0006355
Car01g02679 339 PRINTS CCAAT-binding transcription factor subunit B signature 213 236 IPR001289 GO:0003700|GO:0006355
Car01g02679 339 SMART cbf3 178 239 IPR001289 GO:0003700|GO:0006355
Car01g02679 339 ProSiteProfiles NF-YA/HAP2 family profile. 179 239 IPR001289 GO:0003700|GO:0006355
Car01g02679 339 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 21 298 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02679 Car-Chr1 52331328 52335503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02679 14 265 CCAAT-HAP2 Transcription Factor Family AT1G17590 45.283 1.03e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Car01g02679 CBFB_NFYA 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02679 K08064 - gmx:100500765 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02679 01 52331328 52335503 Car07g03062 07 57639201 57644235 PCT