Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02676 ATGGAATACCCTTTTTACCATACGGGAAAAGGAATTGGGTATTGGCAATCTCCCGGTACTCAGCTAGAAGGATCGACATCGTTAGATGGTGGAATCAGCAATTTGGTGTCAGAGGATATGCCTAGCAGCTTCTCGGAGCTCATGAACTTTGATAATTATGCTGGTTTGTGTTCTGGTCCATCCATGACTGATCAAATTATGGCTAATGAGCTTCCAGCTCTTGCCTCGGTATTATATCAATCGTCTGATGGACTCAATATAGTCGAACAGAACAGTGGACAATTCTATATGACAGAAGTTGGTGGAAATTCCAATAATCCGCAGAGCTCGCCCATTTATGGGGAGAAAATTGTGTGTCAGCAAATGGATACCCTACTTGGTTTCTTAGACAACAATGATGCAAATAACTTAAGTTCTAAGCAAAAAATTAACGGGTCTTTGCAACATGTCAATACTTTTGATACGGGCAATTGCGTAATCCCCAAGCCACCTGCTTTGTCGCTTGATGAGAGAATGCTGAAAGCCTTGTCCTTCTTTAAAGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGCACGGTGGTCAAGTCTTCTTAAGCACTAGTGAGCAACCTTATTTACTCGATCAAATGCTTGCAGGGTACCGTGAAGTGTCAAGGACATTTACATTTTCTGCAGAAGGAAAACCAGGTTGTTTACCGGGACTTCCTGGTCGTGTGTTTATCTCCAAAGTTCCTGAGTGGACTTCCAATGTTGGTTATTACAATCCAAGTGAGTACTTGAGGGTTGAGCATGCAAGAAATCACGAGGTTCGTGGGTCAATTGCTTTTCCCATATTTGATATGCACTCTGGACTGCCATGCTGCGCTGTCCTGGAGCTTGTCACTACGAAGGAAAAGCCTAATTTTGACAAAGAATTAGAAATCATTTGTCGTTCACTGCAGCTTGTAAATTTAAGGACTAATGTGCCTTTTCGGCTGCTTCCTGAGTGTCTTTCAAGCAATAAAAGAGCCGCTTTAACAGAGATAGTTGACGTGTTACGATCTGTGTGTCATGCACATAGATTGCCACTGGCATTAACATGGATTCCCTGTTTTTACACCAAGGGCACAAGAGATGAAACTACTAGAATACAAATTAAAGAGGGCAATTCGAGTTCTAGAGAAAAAAACATACTGTGCATTGAAGAATCAGCTTGCTATATAACTGATAGAGTGATGGAAGGATTTGTGCATGCATGCGTTGAACATCATCTTGAGGAAGGGAAAGGTGTAGCTGGGAAAGCGCTTCAATCAAATCATCCTTTCTTCTATCCTGATGTGAAGGCATATGATATTAGTGAGTATCCGCTTGTCCATCATGCACGCAAGTACAGTTTGAATGCTTCAGTTGCAATCAGGCTAAGGAGTACTTATACTTATAATGATGATTACATATTGGAATTCTTTCTGCCTATCAATATGAAAGGGAGTTCAGAACAGCAACTTTTATTAGACAGCCTCTCAGGTACCATGCAGAGAATTTGTACGAGTTTGAGGACAGTTTCAGAGGCCGAATTATCAGGAATCAAGAGCTTGCAGGTGGGGTTTGAAAAGAAAAATGACCCGCGTTTTCCCCCCTTGTCTACTCAAAACTCTCAGATACCATCAATAAAAGAAAACAATGGTTCTGTCCAGAAGCTGTCATTAAAGGCTTCTAACCAGAGAAAGAATGGAAATGAGCCATCTTGTAACCAGGAAACAAATGGACCGAGAAGGCGAGTTGAGAAAAATAAAAGCACATCAGAGAAGAATGTTAGTTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGTCCAACAACTCTGAAAAGGATATGCAGACATCACGGAATTTTAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCTTTGAAGAAAATTCAGACTGTGCTTGACTCTGTCCAGGGAGTTGAGGGTGGGTTGAAGTTTGATCCTTCCATGGGGGCATTTGTGGCAGGAGGGTCAACCATCCAAGAAATTGATGAACATGAAAGTCTCTTTTTTCCCGAGAAGAGCACTGCACAAGACCCTCAGAATTTGGAAAATAAGTTGGAGGGGAAATTGAAGGAAACCAACAGTTCTTCAGTTGATTGCAGTGAAGATTCAAAATCAATGGCAATGGATGATTGTCATGAACAAGCTTGTTTTGGTTCTGTTCTTGGAAAAAGCGACAAATTGGTTCTGAACAAGGGTGGTTTGAGAATAGAAAAATGTAAACATAATAATACAAGTTCTTTTTTTGTTGATGAGATGGATACTTGTGTGGATGGGGATGATGAGGTTGTTGAGCACAACAATCCTACTTCTTCAAGCTTGACCGACTCGTCTAATGGCTCTGGTTCAATGATACACGACATTTCATCAGGTTACGAGGACTTTGAGAACCAGAAGCACTGCAAAGGGAAATCAACTATCGTTGATGGTGGGTCAAAAATCGTCGTGAAAGCTACCTATGGAGAAGATACCATTCGTTTCAAGTTTGATCCATCCACAGGTTGTTTTAGACTATACGAAGAAGTTGCAGCAAGATTCAAACTGCAAAACGGGACGTTCCGGCTCAAGTATCTAGACGATGAAGAAGAATGGGTGATGTTAGTGAACGACTCGGATTTGCAAGAGTGTTTGGAAATATTAAATGATATGGGGACACGTAATGCAAGGTTTCTTGTTCGTGATGTGCCTTGCGTTTTAAGCAGCTCTGGCAGTAGCAATTGCTACTTGGGAGGCAGCTCATAG 2826 0.4151 MEYPFYHTGKGIGYWQSPGTQLEGSTSLDGGISNLVSEDMPSSFSELMNFDNYAGLCSGPSMTDQIMANELPALASVLYQSSDGLNIVEQNSGQFYMTEVGGNSNNPQSSPIYGEKIVCQQMDTLLGFLDNNDANNLSSKQKINGSLQHVNTFDTGNCVIPKPPALSLDERMLKALSFFKESAGGGILAQVWVPIKHGGQVFLSTSEQPYLLDQMLAGYREVSRTFTFSAEGKPGCLPGLPGRVFISKVPEWTSNVGYYNPSEYLRVEHARNHEVRGSIAFPIFDMHSGLPCCAVLELVTTKEKPNFDKELEIICRSLQLVNLRTNVPFRLLPECLSSNKRAALTEIVDVLRSVCHAHRLPLALTWIPCFYTKGTRDETTRIQIKEGNSSSREKNILCIEESACYITDRVMEGFVHACVEHHLEEGKGVAGKALQSNHPFFYPDVKAYDISEYPLVHHARKYSLNASVAIRLRSTYTYNDDYILEFFLPINMKGSSEQQLLLDSLSGTMQRICTSLRTVSEAELSGIKSLQVGFEKKNDPRFPPLSTQNSQIPSIKENNGSVQKLSLKASNQRKNGNEPSCNQETNGPRRRVEKNKSTSEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGILRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSMGAFVAGGSTIQEIDEHESLFFPEKSTAQDPQNLENKLEGKLKETNSSSVDCSEDSKSMAMDDCHEQACFGSVLGKSDKLVLNKGGLRIEKCKHNNTSSFFVDEMDTCVDGDDEVVEHNNPTSSSLTDSSNGSGSMIHDISSGYEDFENQKHCKGKSTIVDGGSKIVVKATYGEDTIRFKFDPSTGCFRLYEEVAARFKLQNGTFRLKYLDDEEEWVMLVNDSDLQECLEILNDMGTRNARFLVRDVPCVLSSSGSSNCYLGGSS 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02676 941 ProSiteProfiles RWP-RK domain profile. 582 670 IPR003035 -
Car01g02676 941 Gene3D - 838 922 - -
Car01g02676 941 MobiDBLite consensus disorder prediction 538 601 - -
Car01g02676 941 Pfam RWP-RK domain 602 650 IPR003035 -
Car01g02676 941 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 712 937 - -
Car01g02676 941 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 6 710 - -
Car01g02676 941 Pfam PB1 domain 843 922 IPR000270 GO:0005515
Car01g02676 941 PANTHER PROTEIN NLP8 712 937 IPR045012 GO:0003700
Car01g02676 941 PANTHER PROTEIN NLP8 6 710 IPR045012 GO:0003700
Car01g02676 941 MobiDBLite consensus disorder prediction 542 586 - -
Car01g02676 941 MobiDBLite consensus disorder prediction 794 810 - -
Car01g02676 941 ProSiteProfiles PB1 domain profile. 841 923 IPR000270 GO:0005515
Car01g02676 941 MobiDBLite consensus disorder prediction 788 810 - -
Car01g02676 941 CDD PB1_NLP 844 922 IPR034891 -
Car01g02676 941 SMART PB1_new 841 923 IPR000270 GO:0005515
Car01g02676 941 SUPERFAMILY CAD & PB1 domains 834 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02676 Car-Chr1 52259186 52266908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02676 1 938 NLP Transcription Factor Family AT2G43500 50.828 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Car01g02676 PB1 8.5e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02676 - - gmx:100804426 1373.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02676 01 52259186 52266908 Car06g03708 06 68807031 68811972 PCT