Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g02662 | ATGAAAATTCAATGTGATGTTTGTGAGAAAGCAGCAGCAACAGTGATTTGTTGTGCTGATGAAGCTGCTTTGTGTGCTAAATGTGATATTgaagttcatgctgcaaacaaacttgcaagcaagcaccaaaggcttcttcttcaatctctctcaaacaagCTTCCTAGATGTGACATATGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGACAGGGCACTCTTCTGTCAAGATTGTGATGAACCGGTTCATTCGGCCGGTAGTCTCTCGGCGAACCACCAGCGGCTCCTCGCTACCGGTATCCGAGTGGCCATGAGTTCTAATTGCGCCGAAGACGACGAACAAACTCACATAGATCCACCTGATAGAAATACACAACAAGTTTCTCTTGAAACTCCTTCTCAACAAGTGCCTAACTTTACATCCTCTTGGGTTGTTGATGACTTATTGGAGTTTGCAGATTTTGAATCCTCTGATAAAAAGGAATCAATGCAATTTGGAGAAATGGAATGGTTCACAAATGAGAGTCTTTTTGGTGAAGAATTTACTCAAGAAGCTATGGCTGCAGCTGAAGTTCCTCAAGTTCCTCAACTTTCAGTAACTCATGCTAGCAACAATTTTTCATCACAAAGAACCTCAAAGTCTCACATGTCTAACAAAAAGCCTAGAATTGAACTCAAACAAgatgattattatgatgatgaagatgaGTACTTCACTGTGCCTGATCTTGGCTGA | 741 | 0.3617 | MKIQCDVCEKAAATVICCADEAALCAKCDIEVHAANKLASKHQRLLLQSLSNKLPRCDICQDKPAFIFCVEDRALFCQDCDEPVHSAGSLSANHQRLLATGIRVAMSSNCAEDDEQTHIDPPDRNTQQVSLETPSQQVPNFTSSWVVDDLLEFADFESSDKKESMQFGEMEWFTNESLFGEEFTQEAMAAAEVPQVPQLSVTHASNNFSSQRTSKSHMSNKKPRIELKQDDYYDDEDEYFTVPDLG | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g02662 | 246 | CDD | Bbox1_BBX-like | 57 | 98 | - | - | |
| Car01g02662 | 246 | Gene3D | Classic Zinc Finger | 1 | 93 | - | - | |
| Car01g02662 | 246 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270 | |
| Car01g02662 | 246 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 246 | - | - | |
| Car01g02662 | 246 | MobiDBLite | consensus disorder prediction | 202 | 216 | - | - | |
| Car01g02662 | 246 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Car01g02662 | 246 | PANTHER | B-BOX ZINC FINGER PROTEIN 24 | 1 | 246 | - | - | |
| Car01g02662 | 246 | MobiDBLite | consensus disorder prediction | 113 | 135 | - | - | |
| Car01g02662 | 246 | MobiDBLite | consensus disorder prediction | 202 | 228 | - | - | |
| Car01g02662 | 246 | Pfam | B-box zinc finger | 52 | 96 | IPR000315 | GO:0008270 | |
| Car01g02662 | 246 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
| Car01g02662 | 246 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270 | |
| Car01g02662 | 246 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car01g02662 | Car-Chr1 | 52163295 | 52164919 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car01g02662 | 1 | 161 | Orphan Transcription Factor Family | AT1G06040 | 61.176 | 1.90e-66 | 202 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | Others | Car01g02662 | zf-B_box | 9.9e-09 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g02662 | - | - | vun:114183169 | 391.349 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car01g02662 | 01 | 52163295 | 52164919 | Car06g03694 | 06 | 68695457 | 68698837 | PCT |