Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02630 ATGGATTCATCAGATCTTCAACAACAACAGGTAAATTCTTCTTCAGGTTTAACACGTTATCGATCAGCACCAAGTTCTTATTTCAACAACATCATTGACAGAGAATTCTACGAACATGTTTTCAATCGACCTTCAAGTCCAGAAACAGAACGAGTTTTTTCACGGTTTATGAACAGTTTAGGTTCAGAAGAAGATTTATTAGCTCAAAAAATCTCAGTTGATTCTACAGtgaaagaagaagaagaacaacaacaacaagtggttcaacagcagagtaatattaatattaataatattaatattaatgatgatgataataatagtaataattataataactctgctgctacaacttctcatggtttttatcaaagctCAGTGATGCCACCTTTGCCAAATCAGAATCTCTCTTCAGGTATGGAAGGAAATTATTCAATGGGAGTTAATCGGTTACAGCAGATGAAATCTCATGGTGGAAATAATTCTAATCTCATCAGACATAGTAGTTCACCAGCTGGTTTATTTTCACAAATTAATATTGAAAATGGGTATGTTATTATGAGAGATATGGGAAATTTAGGAGCTGTTAACAACTCTGTAAAAGAAGCAAAATTTTCTACTACAAGGAGTTTGAAGAATTCATCAAACTATTCATCACGACCAATGTCATCAATAGCTGAAATTGGCGACAAAGGCAATAGAGAAAACAATCAAGAAAATGATGTTTTTGGTGAAAATCGAGGTAACGATTATATCTCAGAATATCAGGTTGATACTTGGGATGACACTGAAATGATGTCTGAAAATGTTGGTGGTCTAAAAAGATTTAGAGACAATGATTCAAAACAACAATTTTCTGGTTTAAATGCATCTTCTTCTGTTCAGAATGAAACAGGAGGAGGACATTCTAGTTCTTCTCCTTTGGCTCATCAATTGAGTATGCCAAATACTTTATCTGAAATGGCAGCTATGGAGAAGTTTCTGCATTTTTCAGATTCTGTTCCGATGAAAATCCGCGCCAAGCGCGGCTGTGCTACTCATCCAAGAAGCATTGCAGAGAGGGTTAGAAGGACTAAAATTAGTGAACGTATGAGGAAGCTACAAGATCTAGTCCCAAACATGGAGAAGCAAACAAACACAGCAGATATGTTGGACTTAGCTGTGGATTACATCAAAGACCTTCAAAACCAAGTTCAGACGCTTTCAGATTGTCGAGCAAAGTGTACGTGTTCACACAAGCAGCAACAATAA 1251 0.3253 MDSSDLQQQQVNSSSGLTRYRSAPSSYFNNIIDREFYEHVFNRPSSPETERVFSRFMNSLGSEEDLLAQKISVDSTVKEEEEQQQQVVQQQSNININNININDDDNNSNNYNNSAATTSHGFYQSSVMPPLPNQNLSSGMEGNYSMGVNRLQQMKSHGGNNSNLIRHSSSPAGLFSQINIENGYVIMRDMGNLGAVNNSVKEAKFSTTRSLKNSSNYSSRPMSSIAEIGDKGNRENNQENDVFGENRGNDYISEYQVDTWDDTEMMSENVGGLKRFRDNDSKQQFSGLNASSSVQNETGGGHSSSSPLAHQLSMPNTLSEMAAMEKFLHFSDSVPMKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMEKQTNTADMLDLAVDYIKDLQNQVQTLSDCRAKCTCSHKQQQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02630 416 Gene3D - 346 408 IPR036638 GO:0046983
Car01g02630 416 MobiDBLite consensus disorder prediction 211 248 - -
Car01g02630 416 MobiDBLite consensus disorder prediction 283 311 - -
Car01g02630 416 Pfam Helix-loop-helix DNA-binding domain 349 395 IPR011598 GO:0046983
Car01g02630 416 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 5 413 - -
Car01g02630 416 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 413 - -
Car01g02630 416 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 394 IPR011598 GO:0046983
Car01g02630 416 SMART finulus 350 400 IPR011598 GO:0046983
Car01g02630 416 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 407 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02630 Car-Chr1 51918486 51922151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02630 7 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.474 5.84e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car01g02630 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02630 - - gmx:100805812 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02630 01 51918486 51922151 Car01g02630 01 51918486 51922151 ECH
Car06g03656 06 67956633 67959679 Car01g02630 01 51918486 51922151 ECH