Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02629 ATGGATTCTTCTGTTGTTATGGGTAACTCAGTTCAAGAACCTAATAATgaaatggaatttgaatctcatgaagctgcatatgcattttacaaagaatatgctaaatctgtagggtttggtaCTGCTAAATTGAGCAGTCGCCGATCTAGGGCATCAAAGGAATTTATTGATGCTAAATTTTCATGTATAAGATATGGTAATAAGCAACAATCTGATGATGCAATTAATCCACGCCCTTCCCCGAAAATCGGTTGTAAAGCTAGCATGCATGTTAAGAGAAGACAAGATGGTAAATGGTATGTTTATAGCTTTGTGAAGGAGCATAATCATGAGCTTTTACCTGCTCAAGCTCATTTCTTTCGAAGTCATAGGAATTCTGATCCATTAAGTAATGATGTTCGGATGCGACGGAGGAAGAATTCGACCCCAGGTAGTAAATTATTTAGTTCATATCAGAATGTTGATTGTTTAGAGAATTTTATGATgaaacatcaacatgacaaaggaagaagtttggttttagaagtagggcatgcccaattgcttcttgaactcttcatgcacatgcaggaagaaaatccaaaattcttctatgcagttgatttgaacgaagagcatcgacttagaaatgtgttctgggttgattctaaaggtttggaagatttttcttatttttccgatgttgtttcttttgacacaacatatttcactagcaagtataaaataccattggtacttttcattggagttaaccatcatgttcaaccaacgttgcttggatgtgcattgatagctgatgagacagtgtatacttacgcctggttactgcaaacttggtttgtagcaatgggggaacgggctccacaagtgtttctgactgaccaaaacgacgctattaaagctgctgttgctgctgtttttcccggaacacgtcattgtttttgtttgtggcatgttttggaaaagataccaaaacagcttgaatttttaagtacatggcatgatagttttatggaaaagttcaacaaatgtatatttaaatcatggacagaggaacaatttgaaaggagatggtggaagctggttgacaggtttaaacttagagatgttaagtgggttcaatccttgtatgatgatcgtgcatgttgggtgccaacttttatgagggatatttcttttgtgggcttgtcttctaactcacgctcggaaattttaaattctttttttgacaaatatgtCCAAGTTGATACTTCATTAAGAGAATTTATAGAACAGTACCGACTGATTCTTGAAGATAGAAATGAAGAGGAAGCCAAAGCAAATTTTGATGCTTGGCATGAAACTCCTGAATTAAAGTCTCCTTCCCCTTTTGAAAAACAACTGTTGTTAGTTTACACACATGAAATCTTTCAAAAGTTTCAGTTTGAGGTTTTAGGCGCTTCTGCTTGCCATCTAAAGAAAGAAAATGATGGTGTAATTACTACTTATAATGTGAAAGACTTTGAAAATATTCAGAACTACATGGTAGAGTGGAACACATCAAACTCAGATATATGCTGTTCTTGTCACTTGTTTGAATATAAAGGTTACCTCTGTAGACATGCAATTGTCGTTCTACAAATGTCTGGTGTTTTTAGCATCCCAACAAAGTATATATTGAAAAGATGGACAAATGCTGCTTTAAGTAGGCATCCTATTGGTGAAAAATTGGAAGAGGTTCAGTCGAAGGTCCGGAGATTTAACGATTTATGTAGACGAGCCATAATATTGGGTGAAGAAGGTTCTTTATCCCAAGAAAGTTACTATATTGCTTTAGAAGCCTTAAGTGAAGCTCTAAAGCAATGTGCAAATTTGAACAACTCTGTTGAGAATGCAGCCTTAGCTACCCATGTTGGTTGCAATGTTGAAGAAGAGTATCAATCTATTATTGCATCTAATGATAACGTCTCGGATCCAAAAATGAATACGGGTAAGAAGGCTCTGAGGACTGGTGTGGCTAGTAGGAGTCTAGTAAGCGTTGAAACTGTTGAAGGAAATAAAGGAAAGGTACCTCAGCTTGGAGCAGCAAGTGGTAACGATGGTTTTCAACAAATGGAGCCTACTGATCTAAGGTCACATAATATGATGCCAATGCAGTTTCACAGCATGGTGCCGGTTCTGTTCCATAATGTTTCTTCTCCATTTCACGCTGCAGCGTCAACTCATTTGCATGACAATCATCTTCCTCCTTAG 2232 0.2366 MDSSVVMGNSVQEPNNEMEFESHEAAYAFYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRNSDPLSNDVRMRRRKNSTPGSKLFSSYQNVDCLENFMMKHQHDKGRSLVLEVGHAQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDSKGLEDFSYFSDVVSFDTTYFTSKYKIPLVLFIGVNHHVQPTLLGCALIADETVYTYAWLLQTWFVAMGERAPQVFLTDQNDAIKAAVAAVFPGTRHCFCLWHVLEKIPKQLEFLSTWHDSFMEKFNKCIFKSWTEEQFERRWWKLVDRFKLRDVKWVQSLYDDRACWVPTFMRDISFVGLSSNSRSEILNSFFDKYVQVDTSLREFIEQYRLILEDRNEEEAKANFDAWHETPELKSPSPFEKQLLLVYTHEIFQKFQFEVLGASACHLKKENDGVITTYNVKDFENIQNYMVEWNTSNSDICCSCHLFEYKGYLCRHAIVVLQMSGVFSIPTKYILKRWTNAALSRHPIGEKLEEVQSKVRRFNDLCRRAIILGEEGSLSQESYYIALEALSEALKQCANLNNSVENAALATHVGCNVEEEYQSIIASNDNVSDPKMNTGKKALRTGVASRSLVSVETVEGNKGKVPQLGAASGNDGFQQMEPTDLRSHNMMPMQFHSMVPVLFHNVSSPFHAAASTHLHDNHLPP 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02629 743 PANTHER PROTEIN FAR1-RELATED SEQUENCE 4 2 704 - -
Car01g02629 743 Coils Coil 605 628 - -
Car01g02629 743 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 704 IPR031052 GO:0006355
Car01g02629 743 SMART 26again6 518 545 IPR006564 GO:0008270
Car01g02629 743 ProSiteProfiles Zinc finger SWIM-type profile. 507 543 IPR007527 GO:0008270
Car01g02629 743 Pfam MULE transposase domain 228 321 IPR018289 -
Car01g02629 743 Pfam SWIM zinc finger 513 541 IPR007527 GO:0008270
Car01g02629 743 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02629 Car-Chr1 51901498 51905379 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Car01g02629 MULE 2.6e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02629 - - gmx:100805273 1303.12