Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02627 ATGGATTCTAAGATTGCACTCAGTACGGAAAAACTTGACCTCAACAACCTAAAACCACTCAAAGTTTTAGGTAAAGGAGCAATGGGAACCGTCTTCCTCGTTcaacaacaacaacaacacaacaacTCTTACATGGCACTTAAGGTTGTTGATAAATCCTCCACTCACGACTCCCACCGTCGAGCCCTCTGGGAAATCCATGTCTTATCCACTTTGGCCCATCCATTTCTCCCTTCTCTTTTGGGCTTCTTCGAAACGGATCAATTATTGGGCTGGGCCGTTCCTTATTGCCCAGGCGGTGACCTCAATGTTCTTCGTTACCGCCAAACGGATCATGTATTCTCCCCAACGGTTATCCGTTTCTACTTAGCAGAGATTCTCTGTGCTCTCGACCACCTTCATACCATGGGCATAGCATATCGTGACCTTAAACCCGAAAACATCCTCATTCAACAATCAGGCCACGTCACCTTAACTGATTTCGATCTCTCACGCAAACTCTCCCCTAAAACCGTTAAAATTAAAACCATCATTTCAGAAAACCACGAATCTCGCCGCGAAATTCGCCACTCGAGGGTCCCACTTAACAGAAAGCCGTTGAAGAATGCAAAGACAGCCAGAGTTAGTCCAGTGAGTCGACGCGGGTTGAGTTTCTCCGACGGCGAACGGTCTAACTCGTTCGTCGGCACGTCGGAATACGTCGCGCCGGAGGTTGTTCGAGGCGATGGACACGAGTTCGCTGTTGATTGGTGGGCCCTTGGGGTTTTGACTTACGAGATGTTATATGGGAAAACGCCGTTTAAGGGGAAGAATCGGAAGGAAACGTTTCGAAACGTGCTTTTCAAGACACCGGAGTTTGTTGGAAGGAAAACGGCGTTAACGGATCTTATTGAACGGTTGCTAGAGAAGGATCCTATGAAACGATTGGGTTATTTTGGAGGTGCTTGTGACATTAAGGAGCATGAATTCTTTAGAGGGGTGAAGTGGAATTTGTTAACGGAGGTTGTACGGCCGCCGTTTATTCCGTCAAGAGATGACGATTATTTGACGGAGGGTAAATTAGCTGCGGGAGTGAATATAAATGACTACTTCGAAAAGTTGAAGTCTCCGCCGTCGTTACCTACTTCACCGTCGTCTGATTTTGAGAATAGTGTTTCTTTTGCTGAGTTCTGA 1173 0.4587 MDSKIALSTEKLDLNNLKPLKVLGKGAMGTVFLVQQQQQHNNSYMALKVVDKSSTHDSHRRALWEIHVLSTLAHPFLPSLLGFFETDQLLGWAVPYCPGGDLNVLRYRQTDHVFSPTVIRFYLAEILCALDHLHTMGIAYRDLKPENILIQQSGHVTLTDFDLSRKLSPKTVKIKTIISENHESRREIRHSRVPLNRKPLKNAKTARVSPVSRRGLSFSDGERSNSFVGTSEYVAPEVVRGDGHEFAVDWWALGVLTYEMLYGKTPFKGKNRKETFRNVLFKTPEFVGRKTALTDLIERLLEKDPMKRLGYFGGACDIKEHEFFRGVKWNLLTEVVRPPFIPSRDDDYLTEGKLAAGVNINDYFEKLKSPPSLPTSPSSDFENSVSFAEF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02627 390 ProSiteProfiles Protein kinase domain profile. 17 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02627 390 MobiDBLite consensus disorder prediction 369 390 - -
Car01g02627 390 Gene3D Transferase(Phosphotransferase) domain 1 221 343 - -
Car01g02627 390 SUPERFAMILY Protein kinase-like (PK-like) 14 349 IPR011009 -
Car01g02627 390 Gene3D Transferase(Phosphotransferase) domain 1 101 171 - -
Car01g02627 390 PANTHER FLIPPASE KINASE 1-RELATED 12 371 - -
Car01g02627 390 Coils Coil 387 390 - -
Car01g02627 390 SMART serkin_6 17 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02627 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Car01g02627 390 ProSitePatterns Protein kinases ATP-binding region signature. 23 48 IPR017441 GO:0005524
Car01g02627 390 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 12 371 - -
Car01g02627 390 MobiDBLite consensus disorder prediction 371 390 - -
Car01g02627 390 Pfam Protein kinase domain 220 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02627 390 Pfam Protein kinase domain 20 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02627 390 Gene3D Phosphorylase Kinase; domain 1 17 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02627 Car-Chr1 51883512 51885002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02627 12 371 AGC Kinase Gene Family AT1G51170 61.765 1.23e-155 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Car01g02627 Pkinase 4.5e-34 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02627 01 51883512 51885002 Car01g02627 01 51883512 51885002 ECH
Car01g02627 01 51883512 51885002 Car06g03652 06 67896312 67897754 PCT