Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02625 ATGAACTCAAACAACTGGCTTTCCTTTCCACTTTCTCCAACTCATCATTCTTCAATACCACCTCATCTTCAAACAACTCATGAATCTCATCACTTTTCACTTGGAACATTAGTCAATGACACCATGGAAAACCCTTTCCAAAATCATGATTGGAATCTGATTAACAGTGATAGCTGCAACGAAGTTCCAAAGGTTGCAGATTTTCTTGGTGTGAGCAAGACAGAAAATGATGAGTCAGATCTTGCAGCCTATAATGAAATGAATAACTCAAATGATAATTCAGAGAATTACCTATTCATGCCGGTACAAAACTCAATGATAGCAACTTGTTCAAGCAATTATGAATATCAAGAAAATGGTAACAATAATCTTCAGTCATTGACATTGTCAATGGGAAGTGGTAAGGATTCAACATGTGAAACCAGTGGTAGTGGTGGTCGTGATAATAATACTAATAACACCGTTGAAGCAGTTGCACCTAGAAGAGCTTTGGATACCTTTGGACAAAGAACTTCAATATATCGTGGTGTAACAAGACATAGATGGACTGGAAGGTATGAAGCTCATCTTTGGGATAATACTTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGGCAAGTTTTACTTTATGAATATGCTATAGGTGGGTATGACAAAGAAGAGAAAGCAGCAAGGGCCTACGATTTAGCAGCACTAAAATATTGGGGGACATCTACCACTACAAATTTTCCCATCAGTAACTATGAGAAGGAAATTGAAGATATGAAGCACATGACAAGACAAGAATTTGTTGCCGCCATAAGAAGAAAGAGCAGTGGATTTTCAAGGGGTGCTTCAATGTATCGTGGAGTCACAAGGCATCACCAACATGGGAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAACAAAGATCTCTATTTAGGAACTTTTGGGACTGAGGAAGAGGCTGCAGAAGCTTATGACATAGCTGCAATAAAGTTCAGAGGTTTAAACGCAGTGACAAATTTTGATATGACTCGTTATGACGTGAAATCAATTCTTGAAAGTAACACTCTTCCAATAGGAGGAGGTGCTGCAAAACGGTTAAAAGAAGCTCAAGCTTTAGAATCTTCTAGAAAAAGGGATCAAGATATTTTAGCACTTGCTTCCTCTTCAACCTCAACTAGGATGCAATTACAAGGTTACCCTTTAATGCACCACACGCAATTTCAACACTCACAGCCATTTTTAACACTACAGAACCAAGATTTATCTCATTCTCATTATAACCACGAGTTTCATCAGAGTTATATACAAACTCAGCTTCAGTTAAACCAACAGCACCAAAGGGGATTTTATAATTATAATGGTAATTACATTCAGAATCAACCGGGTTTGATGAACATGATGGAGAATAGTAATGGTGGTGGAGGGTATTTGGGGaataataataatagtaatagtaatgagaatGAGCTTGGAATGTTGGGATTGAATTGTTCGAGTAATAACAATGTTGTAGGAACAGGGGAGGAGGTTGATTATGACATGGCTTCCGGAGGTTATGGAGGTTGGTCGGCGCCGGATTCAAATGCCGGTGGCGGTGTTTTTACAACTTGCCGCCTCTTCATTTCACATCGATGCTACTCAACACCATCTTCACTCTCACTTTCGGTTAATCATCAAGATATTATAAATCGAGTTATTATTATCATAATGGTAAAAGCGTATAAACAAGAACACGTGTACAAGCATCCATGGGAACGAGTAACCTCTGCATCATGGCGAAAATTCACCGATGCAGAGAATAAGCGCGTTTTATCACACATTCTAGAGGTTGATACATTGAATAAAAGTTTAGATCCTTCATCGGGTAAACTTTGCGCGACACGTGCGATAACGGTTCGTTGTCCGTGGCTCGTGCGAAGAATTATCGGTGAAGATATTTGTCAATGTGTTGAAACAACCGTTGTTGATGCGAAATCGCGTTCGATGCAACTTAGTTACCGGAATGTTAATATGGAGAAGTTTATTGAAGTGGAAGAGAATACTAGGTATGATCCGCATCCGGATAATCCGGATGGATGGACGATTTGTCAGCAGGAGACTCGAATTCGGATTAAGCCTTTGTCTGCTTTGGCTTCTATGGCGGAGAAAGTGGAGCAGCGTTGTGCTGATAGGTTTCTTCAGAATAGTGCTAAGAGTAGAGATGTTATGGAGAGGATATGCAAGTATCTTGAGGCTGAGTCTAGCTCCTTTTCATTGTGA 2250 0.3951 MNSNNWLSFPLSPTHHSSIPPHLQTTHESHHFSLGTLVNDTMENPFQNHDWNLINSDSCNEVPKVADFLGVSKTENDESDLAAYNEMNNSNDNSENYLFMPVQNSMIATCSSNYEYQENGNNNLQSLTLSMGSGKDSTCETSGSGGRDNNTNNTVEAVAPRRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNTCRREGQSRKGRQVLLYEYAIGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEIEDMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTEEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKSILESNTLPIGGGAAKRLKEAQALESSRKRDQDILALASSSTSTRMQLQGYPLMHHTQFQHSQPFLTLQNQDLSHSHYNHEFHQSYIQTQLQLNQQHQRGFYNYNGNYIQNQPGLMNMMENSNGGGGYLGNNNNSNSNENELGMLGLNCSSNNNVVGTGEEVDYDMASGGYGGWSAPDSNAGGGVFTTCRLFISHRCYSTPSSLSLSVNHQDIINRVIIIIMVKAYKQEHVYKHPWERVTSASWRKFTDAENKRVLSHILEVDTLNKSLDPSSGKLCATRAITVRCPWLVRRIIGEDICQCVETTVVDAKSRSMQLSYRNVNMEKFIEVEENTRYDPHPDNPDGWTICQQETRIRIKPLSALASMAEKVEQRCADRFLQNSAKSRDVMERICKYLEAESSSFSL 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02625 749 Pfam AP2 domain 281 330 IPR001471 GO:0003700|GO:0006355
Car01g02625 749 Pfam AP2 domain 173 236 IPR001471 GO:0003700|GO:0006355
Car01g02625 749 CDD AP2 172 246 IPR001471 GO:0003700|GO:0006355
Car01g02625 749 MobiDBLite consensus disorder prediction 132 153 - -
Car01g02625 749 ProSiteProfiles AP2/ERF domain profile. 280 338 IPR001471 GO:0003700|GO:0006355
Car01g02625 749 SMART rav1_2 280 344 IPR001471 GO:0003700|GO:0006355
Car01g02625 749 SMART rav1_2 173 250 IPR001471 GO:0003700|GO:0006355
Car01g02625 749 PRINTS Ethylene responsive element binding protein signature 320 340 IPR001471 GO:0003700|GO:0006355
Car01g02625 749 PRINTS Ethylene responsive element binding protein signature 174 185 IPR001471 GO:0003700|GO:0006355
Car01g02625 749 ProSiteProfiles PRELI/MSF1 domain profile. 568 745 IPR006797 -
Car01g02625 749 ProSiteProfiles AP2/ERF domain profile. 173 244 IPR001471 GO:0003700|GO:0006355
Car01g02625 749 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 5 502 - -
Car01g02625 749 Gene3D AP2/ERF domain 280 340 IPR036955 GO:0003700|GO:0006355
Car01g02625 749 Gene3D AP2/ERF domain 173 246 IPR036955 GO:0003700|GO:0006355
Car01g02625 749 CDD AP2 279 338 IPR001471 GO:0003700|GO:0006355
Car01g02625 749 Pfam PRELI-like family 582 742 IPR006797 -
Car01g02625 749 SUPERFAMILY DNA-binding domain 279 339 IPR016177 GO:0003677
Car01g02625 749 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 502 - -
Car01g02625 749 SUPERFAMILY DNA-binding domain 172 246 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02625 Car-Chr1 51845585 51850603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02625 1 532 AP2-EREBP Transcription Factor Family AT1G51190 57.095 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Car01g02625 PRELI 1e-39 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02625 K09285 - gmx:100788471 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02625 01 51845585 51850603 Car01g02625 01 51845585 51850603 ECH