Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02621 ATGAGTACTGATCCTTACTGCTCCACTGGTTATTGCTTTGACCTAAACTCACCATATCTTTTCTCTTCTTCATCACTTTCATCCAATAATAACACTAGTACTACTACTCCATTCTATTTTCCTTCTCAATATCAATCTTCACCTTCATCTCCTCCAAGAGAAGCTCTTCCTCTCCTTAACCTAAACCCTACAAAAAATGAAGATCTTCTTGAATCTTCCTTTAGTTCCATGGAAATGATGAATAAATCATCAAGCTCTTTGgatgatgatgatgatggtgTTACTGTTGCTTTGCATTTAGGGCTACCAAGTTTAAGTTCAGCTGATTTATTAGCTTCAAACATGTTCACCACTTTGGTTTCAGAAAAAGATGATCATCAAAAACAACAACTCACTGAGTGTCCATCAAATAAAATTAATAGGGGTCAGTATTGGATCCCTACCCCTGCTCAGATTTTGATTGGTCCTACACAGTTCTCATGTCCCCTTTGTTTCAAGACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGAAAAGGACCAGAATCTCTAAGAGGAACACAACCAACAGCAATGCTAAGACTACCATGTTATTGTTGTGCACCTGGATGCAAGAACAACATTGATCATCCAAGATCAAAAGCACTAAAAGATTTTAGAACACTTCAAACACATTACAAAAGAAAGCATGGAATAAAGCCTTTTATGTGTAGAAAGTGTTGCAAAGCATTTGCAGTGAGAGGAGATTGGAGAACTCACGAGAAAAATTGTGGAAAACTTTGGTATTGTTGTTGTGGGTCCGATTTTAAACACAAAAGATCTCTTAAAGATCATATCAAGGCTTTTGGAAATGGACATAAAGCTTATGGAATTGATATTCAAGATATTGATGAACCAGGCTCTGAAATTGATCAACAAGAGAATAATGAATCTTTCCAGTCATAG 969 0.3571 MSTDPYCSTGYCFDLNSPYLFSSSSLSSNNNTSTTTPFYFPSQYQSSPSSPPREALPLLNLNPTKNEDLLESSFSSMEMMNKSSSSLDDDDDGVTVALHLGLPSLSSADLLASNMFTTLVSEKDDHQKQQLTECPSNKINRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRSKALKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCCCGSDFKHKRSLKDHIKAFGNGHKAYGIDIQDIDEPGSEIDQQENNESFQS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02621 322 MobiDBLite consensus disorder prediction 39 62 - -
Car01g02621 322 ProSitePatterns Zinc finger C2H2 type domain signature. 161 181 IPR013087 -
Car01g02621 322 PANTHER ZINC FINGER PROTEIN WIP2 17 316 IPR043584 GO:0003700|GO:0010468
Car01g02621 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 186 IPR013087 -
Car01g02621 322 MobiDBLite consensus disorder prediction 39 53 - -
Car01g02621 322 Gene3D Classic Zinc Finger 158 181 - -
Car01g02621 322 Gene3D Classic Zinc Finger 217 297 - -
Car01g02621 322 SUPERFAMILY beta-beta-alpha zinc fingers 222 263 IPR036236 -
Car01g02621 322 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 17 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02621 Car-Chr1 51819012 51820532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02621 53 322 C2H2 Transcription Factor Family AT3G57670 61.830 1.72e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car01g02621 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02621 - - gmx:100789416 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02621 01 51819012 51820532 Car01g02621 01 51819012 51820532 ECH