Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02614 ATGGCAACGAGTTATCACCAACCTTCTTCACTAGAAGAAGTCCGAACCCTTTGGATTGGCGATTTACAATATTGGGTTGACGAAACCTATCTCACTCACTGTTTCTCCCATACCGGCGAAGTTATTTCCATCAAAATCATTCGTAACAAAATCACCGGCCAACCCGAAGGTTACGGTTTCGTCGAATTCGTATCTCATACCGCCGCAGAACGAGTTCTTCAAAGTTACAATGGCACTCAAATGCCAGGAACCGAACAAACTTTTCGATTAAATTGGGCTTCATTCGGTATCGGTGAACGCCGTCCTGATGCCGGTCCCGATCACTCTATTTTCGTCGGAGATCTTGCTCCTGATGTTACTGATTATCTTTTACAGGAAACGTTTCGTACTCATTACCCTTCTGTTCGTGGTGCTAAAGTTGTAACTGACCCTAATACTGGTCGTTCTAAGGGTTATGGTTTTGTTAAATTTTCTGATGAGAGTGAAAGGAACCGTGCTATGTCTGAAATGAACGGTGTTTATTGTTCTACTAGGCCTATGCGTATTAGTGCTGCTACACCTAAGAAAACTACTGCTAGTGTTGCTTATCAACAACCTTATGCTGCTGTTGCCGTTGCTGCTCCACCACCTGTTCCTAAAGCAATATATCCTGTGCCGGCGTACACTGCCCCACTGAATACCATTCCACCGGAATATGATGTAAACAATACTACCatttttgttggtaatttggatcttaatgtctcagacgaggagctgaagcaaaattttctgcaatttggagatattgtttctgccaaagttcatgccggcaaaggatgtggttttgttcaatttgGGGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATAATAGGTCAACAAGTGATCCGAGTTTCTTGGGGTAGGCCCCTTACAGCTAGACAGGACTTACCTGGTGGCTGGGGACAGCAAATGGATCCAAGTCAATGGAGTGCCTACTATGGGTATGGTCAGGGTTATGAAGCTTATGCATATGGGGCTGCTCAGGATCCTTCGCAGTATGCATATGCTGGATATGCTGGCTATGCACAATACCCCCAACAGGTTGAAGGTGCCCAAGACGTATCAGCTATGTCTGTGCCTACCATGGAACAAAGGGAGGAGTTGTATGATCCTCTGGCATTGCCTGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACATGGAAGTGCCATTTTAGGGCGGTCTCTCTGGCACAAAACCCATTCCTCATCCTTACAGCTGGCTTAG 1290 0.414 MATSYHQPSSLEEVRTLWIGDLQYWVDETYLTHCFSHTGEVISIKIIRNKITGQPEGYGFVEFVSHTAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYPSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTASVAYQQPYAAVAVAAPPPVPKAIYPVPAYTAPLNTIPPEYDVNNTTIFVGNLDLNVSDEELKQNFLQFGDIVSAKVHAGKGCGFVQFGARASAEEAIQKMQGKIIGQQVIRVSWGRPLTARQDLPGGWGQQMDPSQWSAYYGYGQGYEAYAYGAAQDPSQYAYAGYAGYAQYPQQVEGAQDVSAMSVPTMEQREELYDPLALPDVDKLNAAYLSVHGSAILGRSLWHKTHSSSLQLA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02614 429 CDD RRM2_SECp43_like 107 186 - -
Car01g02614 429 SUPERFAMILY RNA-binding domain, RBD 95 192 IPR035979 GO:0003676
Car01g02614 429 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 6 367 - -
Car01g02614 429 SUPERFAMILY RNA-binding domain, RBD 221 338 IPR035979 GO:0003676
Car01g02614 429 SUPERFAMILY RNA-binding domain, RBD 6 83 IPR035979 GO:0003676
Car01g02614 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 187 IPR000504 GO:0003723
Car01g02614 429 Gene3D - 97 197 IPR012677 -
Car01g02614 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 95 IPR000504 GO:0003723
Car01g02614 429 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 6 367 - -
Car01g02614 429 Gene3D - 14 94 IPR012677 -
Car01g02614 429 CDD RRM1_SECp43_like 16 96 - -
Car01g02614 429 Gene3D - 226 314 IPR012677 -
Car01g02614 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 309 IPR000504 GO:0003723
Car01g02614 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Car01g02614 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 175 IPR000504 GO:0003723
Car01g02614 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 303 IPR000504 GO:0003723
Car01g02614 429 SMART rrm1_1 109 183 IPR000504 GO:0003723
Car01g02614 429 SMART rrm1_1 16 91 IPR000504 GO:0003723
Car01g02614 429 SMART rrm1_1 238 305 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02614 Car-Chr1 51765115 51769679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02614 14 327 Eukaryotic Initiation Factors Gene Family AT2G23350 26.332 4.45e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02614 - - cam:101496574 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02614 01 51765115 51769679 Car01g02614 01 51765115 51769679 ECH