Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02612 ATGAGAAAGCCAGAGGTTTGTAGtaaaaataagaatgacaataagaagaagattaagCTTAGAAAAGGGTTATGGTCACCAGATGAAGATGAGAAGCTTATGAATTATATGGTGAAGAATGGACAAGGTTGTTGGAGTGATGTGGCAAAAAATGCTGGATTGCAAAGGTGTGGAAAAAGTTGTAGACTAAGATGGATTAATTACTTGAGGCCTGATCTTAAAAGAGGTGCTTTTTCTCCTCAAGAAGAGCAACTTATCATCCATTTTCATTCCCTTCTTGGAAACAGGTGGTCTCAAATAGCAGCACGTTTGCCGGGAAGAACCGACAATGAAATAAAAAACTTTTGGAATTCAACCATAAAGAAAAAACTTAAGAATTTGTCTTCAACAACAACATCAACCTCACCAAATGCAAGTGATTCATCCTCACCTGAACCTAATAAAGAGCTCAATATTAATGTTTCTTCACAACATGCAAATTACTACAATTACATGAACATGCCTATGTTCACTTCATCACCACTATCAATGCAAAACAGAGTTTTCAATACCATGAATATTGACACATTGCCTATGCCCACACCTATTGAATATGATGGATACTTGTCACAAATTGGAGTTGACTCTTATTTATTAGAAAATGCTGTTTTTGGGAGTGTAAATATTAATGGAGTGGAAGAGGATGTGTTTGTTCCTAATTCTCTAGAGAATACTAATACTAATACTAATCATCATAATTTGAGAGTGGAGAATACTTGCAAGAGAGAAACTTATAATAATAGTGATTATTATTTTGATCACATAAATAGTAACTACAATATTGATGATCAAAATAGGGGTGAGGTAGTGGAGAATTTGTTTCAAGAAGAATTCAACTTGGGAGAGTGGGGTTTTGAGGAGTTGATGAAAGATGTTTCTTCCTTTTTATTTTCTTGA 936 0.3344 MRKPEVCSKNKNDNKKKIKLRKGLWSPDEDEKLMNYMVKNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEQLIIHFHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKKLKNLSSTTTSTSPNASDSSSPEPNKELNINVSSQHANYYNYMNMPMFTSSPLSMQNRVFNTMNIDTLPMPTPIEYDGYLSQIGVDSYLLENAVFGSVNINGVEEDVFVPNSLENTNTNTNHHNLRVENTCKRETYNNSDYYFDHINSNYNIDDQNRGEVVENLFQEEFNLGEWGFEELMKDVSSFLFS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02612 311 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Car01g02612 311 PANTHER MYB DOMAIN PROTEIN 55 1 310 - -
Car01g02612 311 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Car01g02612 311 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Car01g02612 311 MobiDBLite consensus disorder prediction 127 150 - -
Car01g02612 311 Gene3D - 19 75 - -
Car01g02612 311 CDD SANT 25 69 IPR001005 -
Car01g02612 311 PANTHER MYB TRANSCRIPTION FACTOR 1 310 - -
Car01g02612 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Car01g02612 311 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Car01g02612 311 Gene3D - 76 150 - -
Car01g02612 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Car01g02612 311 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Car01g02612 311 CDD SANT 77 117 IPR001005 -
Car01g02612 311 SMART sant 21 71 IPR001005 -
Car01g02612 311 SMART sant 74 122 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02612 Car-Chr1 51742639 51743923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02612 1 130 MYB Transcription Factor Family AT5G12870 81.538 4.45e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car01g02612 Myb_DNA-binding 7.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02612 K09422 - gmx:100785810 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02612 01 51742639 51743923 Car01g02612 01 51742639 51743923 ECH
Car06g03637 06 67667867 67671300 Car01g02612 01 51742639 51743923 ECH
Car01g02612 01 51742639 51743923 Car06g03637 06 67667867 67671300 PCT