Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02598 ATGAACTCGGAAACGCTACCCTCCACGTCGTCGTTTTGGTGCTATAGTTGCACCCGTTTCATTAACCTCTTCGACCTAAACGACGTCGTTTGTCCTCACTGCCAAAGCGGTTTCGTCGAAGAGGTTCAAGCCGGCCAATCTCCCGCGGGTTCTCTCTTCGCCGACGGTATTCAAGCTTCCAGAAGACAAGGCCTACGCCGGAGACGCCGCAACGCCGGCAACCGCTCGCCTTTCAATCCCGTTATCGTTCTCCGTGGACAAGGGGATCAAGACGGTGGCGGAGAAACCGAAGGGAGTAGCTTCGAATTGTACTACGACGACGGAAACGGCACCGGTCTCCGTCCACTTCCGCCGACTATGTCGGAGTTATTGCTAGGTTCTGGATTCGATCGGTTGCTTGAGCAATTCTCTCAGATCGAGATCAACGGTTTTGGTAGGGCAGAGAATCCGCCGGCGTCAAAGGCGGCGATAGAGTCAATGGCGACGGTTGAAATCACCGATGAAGAAGTAGAATCCGAGACACATTGTGCGGTTTGCAAAGAAGCATTCGAACTTGGTTCGGAGGCGCGTAAGATGCCGTGCAAACACCTTTACCATTCCGATTGCATTCTCCCTTGGCTTTCGATGCGAAATTCGTGTCCCGTGTGCCGCCACGAGTTGCCTTCCGATCAAAACTCATCGGAGACTAGAATTTCCGGTCAGATCGATGAAGAAGCGGTTGGATTGACCATATGGAGGTTACCAGGAGGTGGATTCGCCGTTGGGAGATTCATCGGCGGTCGAAGAGCCGGCGAGAGTCACTTGCCGGTGGTGTTTACGGAGATGGATGGCGGTAATAATTCAAATGAAGGATCTAGAAGAATCTCTTTGGCAGTGGGCAGTAACGGAGTTAGAGAGAGACGTGGAATTCGCAGAATTTTTGGGAATTTCTTATCCTTTTTTGGATCCGTTAATTTAAACCGTAGCTTTTCACGGAGAAGAAGATGA 987 0.5147 MNSETLPSTSSFWCYSCTRFINLFDLNDVVCPHCQSGFVEEVQAGQSPAGSLFADGIQASRRQGLRRRRRNAGNRSPFNPVIVLRGQGDQDGGGETEGSSFELYYDDGNGTGLRPLPPTMSELLLGSGFDRLLEQFSQIEINGFGRAENPPASKAAIESMATVEITDEEVESETHCAVCKEAFELGSEARKMPCKHLYHSDCILPWLSMRNSCPVCRHELPSDQNSSETRISGQIDEEAVGLTIWRLPGGGFAVGRFIGGRRAGESHLPVVFTEMDGGNNSNEGSRRISLAVGSNGVRERRGIRRIFGNFLSFFGSVNLNRSFSRRRR 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02598 328 PANTHER OS05G0110000 PROTEIN 8 300 - -
Car01g02598 328 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
Car01g02598 328 Pfam Ring finger domain 175 217 IPR001841 -
Car01g02598 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 223 IPR013083 -
Car01g02598 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 300 - -
Car01g02598 328 SMART ring_2 176 216 IPR001841 -
Car01g02598 328 Pfam Protein of unknown function (DUF1117) 240 324 IPR010543 -
Car01g02598 328 MobiDBLite consensus disorder prediction 66 100 - -
Car01g02598 328 CDD RING-H2_RNF126_like 176 217 - -
Car01g02598 328 Pfam zinc-ribbon 11 41 IPR039525 GO:0061630
Car01g02598 328 SUPERFAMILY RING/U-box 156 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02598 Car-Chr1 51652247 51653669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02598 115 228 C3H Transcription Factor Family AT5G01980 43.860 6.65e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02598 - - aip:107612938 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02598 01 51652247 51653669 Car01g02598 01 51652247 51653669 ECH
Car06g03611 06 67447616 67449661 Car01g02598 01 51652247 51653669 ECH
Car03g01138 03 53699311 53701052 Car01g02598 01 51652247 51653669 ECH
Car01g02598 01 51652247 51653669 Car06g03611 06 67447616 67449661 PCT