Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02587 ATGATGACTATAGTGTACATTGTATCTCTAATAATGTCGTTAACGTGGTTGGCAGAGTCTCGAATTCCAGGGAATTACAACGGTGGTGCATGGGAAACGGCTCATGCCACCTTCTACGGAGGTTCCGATGCTTCCGGAACAATGGGAGGAGCATGTGGTTATGGAAACTTGTACAGCCAAGGTTACGGAGTAAACACAGCAGCATTAAGCACCGCACTTTTCAACAAAGGACTAAGTTGCGGTGCTTGCTTTGAAATCAAATGTGCAAACGACAAAGAGTGGTGTCACTCTGGCAGCCCCTCGATTTTCATTACCGCAACTAACTTTTGTCCTCCTAACTATGCTCTCCCTAACGACAATGGTGGTTGGTGTAACCCTCCTCGTCCACATTTCGACCTTGCCATGCCTATGTTCCTTAAAATCGCCGAATATCGCGCCGGAATTGTCCCTGTCGCCTTTCGCCGGGTGCCGTGTAGGAAACAAGGTGGGATCAGGTTCACAGTTAACGGATTCCGTTACTTTAACTTGGTGCTGATCAGCAACGTCGCGGGTGCAGGGGATATTGTGCGGACCTATGTCAAAGGAACAAGAACCAGATGGATGCCCATGAGCCGAAACTGGGGTCAAAACTGGCAATCAAATGCTGTTTTGGTCGGTCAGTCTTTGTCCTTCAGAGTTACCAGTAGTGACCGTCGCACATCCACTTCCTGGAACATTGCTCCACACAATTGGCAATTTGGTCAAACTTTTACCGGAAAGAATTTCCGAGTTTGA 774 0.4793 MMTIVYIVSLIMSLTWLAESRIPGNYNGGAWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGLSCGACFEIKCANDKEWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKQGGIRFTVNGFRYFNLVLISNVAGAGDIVRTYVKGTRTRWMPMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPHNWQFGQTFTGKNFRV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02587 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Car01g02587 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Car01g02587 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Car01g02587 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Car01g02587 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Car01g02587 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Car01g02587 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Car01g02587 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Car01g02587 257 Pfam Lytic transglycolase 66 152 IPR009009 -
Car01g02587 257 Gene3D - 18 159 IPR036908 -
Car01g02587 257 PANTHER EXPANSIN-A15 4 256 IPR002963 GO:0009664
Car01g02587 257 Gene3D - 163 255 IPR036749 -
Car01g02587 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Car01g02587 257 SMART dpbb_1 66 153 IPR007112 -
Car01g02587 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Car01g02587 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Car01g02587 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Car01g02587 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Car01g02587 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Car01g02587 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Car01g02587 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Car01g02587 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Car01g02587 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Car01g02587 257 PANTHER EXPANSIN 4 256 - -
Car01g02587 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Car01g02587 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02587 Car-Chr1 51556806 51558744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02587 2 257 Expansin Gene Family AT2G39700 80.469 2.01e-158 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02587 - - gmx:100809139 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02587 01 51556806 51558744 Car01g02587 01 51556806 51558744 ECH
Car01g02587 01 51556806 51558744 Car02g01599 02 43825692 43827946 ECH
Car06g03594 06 67277624 67280565 Car01g02587 01 51556806 51558744 ECH
Car03g01125 03 53244657 53248033 Car01g02587 01 51556806 51558744 ECH
Car01g02587 01 51556806 51558744 Car06g03594 06 67277624 67280565 PCT