Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02578 ATGAAGCTTTTGAACCCATCCCACTCACTTCCCTTTTCTCTTCAATCTCACATGCTTCATACAACACCCCAACCCATGGAACTATTTTCTGCTACTAACACTAATGTTCATGTAGCAGTTGGAAACTCGCTTCACAAAACCACCACCTTGCTTCAATGGACCTTTAATCACTTTCAAAACGCGGAAATTGTCATAATTCATGTTTATCAACCTTCTCCTGTTATCCCTACTTTATTGGGGAAAATGCCAGCATCTCAGGCTAATCCTGAGGTGGTATCTGCTTTTagaagagaggaaagagaacagaacaagaagCTCACTGATAAGTATTTGAGGATTTGCTCTGCTGCTAAGGTCAAGGCAAGCGTTATTGTAACAGAAGCTGACCAAGTCCAAAAAGGAATTGTTGATTTGGTTGTTAGACATAATATTAGGAAGCTTGTGATTGGAACGGTACTGGAAAATTGCATGAAAGTGAAAAGGAATTCCGGGAAAGCAAATTACACTTCCAAACATGCTCCTCCTTTCTGTGAAATATGGTTTATCTATAAAGGCAGACACATTTGGACAAGAGAGGCATCTGAAACACCATGTTCATTGTCTTCACGTTCTCAACCCGAGATTGCAGCCACAGAAAGCTTGAGATGCAGATCTTTTCAATATGGTAAGAATGAATTACCCCATTCAGAATATCTTCAACGAGATTCTGCTAGAACTACAGTATTTTCTGGAATTAGAAGCTTGGATCTAGGGGAAATTATAGAAACTGAAGCCACTAATTCATCCAAATCATCCAGTTGTAGCAGTCATTGTTCCCCTGAAAATTCTGCTGGGGTTTATCTTGATACATATTCAGAGGACATGGAAGAAAGAATTAACAGTCAACTTATTGAAACCAAAAGAGAAGCCGAGGCAGCAACAGACAAGTCCTTTGCAGAGCTATTAAAGTGCAGGAGGTTGGAAGTCGAAGCCATGGAGGCCATACAGAAGGTCAAATTGTTTGAATCTGCCCATGCACATGAGGCGGAGCTAAGAAAAAAGGCAGAGGATGTGCTTAGATTTACAGTACTAGAACAACAAAAGCTCTTAGAAGAGAGTGGAGTTATTTCCAGGGAGCTGCAAATGACAATGAGAAATGTGGCTCTACTAGATAGTCGTGCTAAGGAAGCAACCCGTATGCGAGATGAAGCTGCACACGAACTCTCATTAATTCAAGCATCCATCTCAACCTTGTGGCAAGAAAGGCATCAGATCAGGAGACAGAAAATGGAAGCCTTCCGCTGGCTGGAACGGTGGAAAACTCGTGGACAAGTCAGAGCAGCACATTACAATGGGGTCATTGGGTTTGCTGAAGAACTGCCCGAGTTAGCCGAATTTTCATTATCAGATATTCAAAATGCTACATGTAGTTTTTCCAAGAGCTTTGAAATTGCACAAGGTGGATTTGGTCGTATATATAAGGGGGAAATGTTGGGTAGAACTGTTGCTATTAAGAAGTTCCATCAACATAATGTGCAAGGACCAGCAGAGTTTCATCGAGAGGTTCAAATTCTTAGTAGTCTCCAACATCCTCATTTATTGACTTTGCTTGGAGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCAAATGGAACTCTTCAAAACTACCTATTCCGGAAAAGTAACATTATCCCTTTGACATGGAATATCAGAGCCCGAATGATTGCCGAAATCGCCAGTGCACTCTGCTTCTTACATTCTTTTAAACCAGAAGCGATTATCCATGGTGATCTGAAGCCTGAGACTATACTTCTTGATTCTTCACTTAGTTGCAAGATATGTGAGTTCAGGCTGGTAACGGAGGAGTCTTTCTGTAGTCCTAGTTTCCACTTGAGCAGTGAGCCAAAGGGTGCCTTCACATACACGGATCCAGAGTTTCAGCGAACTGGGGTACTAACATCCAAGTCTGACATCTACTCCTTTGGGCTTATTATTTTGCAACTCCTCACTGGCAGGACTCCACTTGGATTAACAGTTCTAGTTCGCCATGCAATTTCATGTGGAAAATTGTCTGCAGTTCTTGATTCTTCAGCTGGAGAGTGGCCTTTATCTGTTGCAGCACGGTTGGTTGAATTGGGTTTGCAATGCTGTGCACAGAATTGCAGAAACAGACCAGAGTTAACACCTACTCTAGTGAGAGAACTGGAACAGTTACATGTTTCAGAAGAGAGACCTGTGCCATCATTTTTCTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAATTGCAGCTGATGGATTTACATATGAAGGGGATGCCATACGTGAATGGTTAGAAAATGGGCATGATACTTCTCCAATGACTAATTTAAAATTGAGTCACATGCTCCTCACTCCCAATCACTCACTTAGACTTGCCATCCAAGACTGGCTCTGCAAATCATAA 2439 0.4129 MKLLNPSHSLPFSLQSHMLHTTPQPMELFSATNTNVHVAVGNSLHKTTTLLQWTFNHFQNAEIVIIHVYQPSPVIPTLLGKMPASQANPEVVSAFRREEREQNKKLTDKYLRICSAAKVKASVIVTEADQVQKGIVDLVVRHNIRKLVIGTVLENCMKVKRNSGKANYTSKHAPPFCEIWFIYKGRHIWTREASETPCSLSSRSQPEIAATESLRCRSFQYGKNELPHSEYLQRDSARTTVFSGIRSLDLGEIIETEATNSSKSSSCSSHCSPENSAGVYLDTYSEDMEERINSQLIETKREAEAATDKSFAELLKCRRLEVEAMEAIQKVKLFESAHAHEAELRKKAEDVLRFTVLEQQKLLEESGVISRELQMTMRNVALLDSRAKEATRMRDEAAHELSLIQASISTLWQERHQIRRQKMEAFRWLERWKTRGQVRAAHYNGVIGFAEELPELAEFSLSDIQNATCSFSKSFEIAQGGFGRIYKGEMLGRTVAIKKFHQHNVQGPAEFHREVQILSSLQHPHLLTLLGVCPEAWSIVYEYLPNGTLQNYLFRKSNIIPLTWNIRARMIAEIASALCFLHSFKPEAIIHGDLKPETILLDSSLSCKICEFRLVTEESFCSPSFHLSSEPKGAFTYTDPEFQRTGVLTSKSDIYSFGLIILQLLTGRTPLGLTVLVRHAISCGKLSAVLDSSAGEWPLSVAARLVELGLQCCAQNCRNRPELTPTLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQIAADGFTYEGDAIREWLENGHDTSPMTNLKLSHMLLTPNHSLRLAIQDWLCKS 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02578 812 PANTHER OS02G0152300 PROTEIN 21 811 - -
Car01g02578 812 SUPERFAMILY RING/U-box 739 811 - -
Car01g02578 812 ProSiteProfiles Protein kinase domain profile. 471 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02578 812 ProSiteProfiles U-box domain profile. 741 812 IPR003613 GO:0004842|GO:0016567
Car01g02578 812 Gene3D Phosphorylase Kinase; domain 1 448 543 - -
Car01g02578 812 CDD RING-Ubox_WDSUB1_like 746 787 - -
Car01g02578 812 PANTHER OS10G0100500 PROTEIN 21 811 - -
Car01g02578 812 SMART Ubox_2 745 808 IPR003613 GO:0004842|GO:0016567
Car01g02578 812 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 38 151 - -
Car01g02578 812 Gene3D Transferase(Phosphotransferase) domain 1 544 741 - -
Car01g02578 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 742 812 IPR013083 -
Car01g02578 812 Coils Coil 289 309 - -
Car01g02578 812 SUPERFAMILY Protein kinase-like (PK-like) 455 728 IPR011009 -
Car01g02578 812 Pfam U-box domain 742 811 IPR003613 GO:0004842|GO:0016567
Car01g02578 812 Pfam Protein tyrosine and serine/threonine kinase 476 724 IPR001245 GO:0004672|GO:0006468
Car01g02578 812 Gene3D HUPs 25 152 IPR014729 -
Car01g02578 812 CDD STK_N 36 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02578 Car-Chr1 51487497 51492197 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02578 33 809 U-box Gene Family AT2G45910 35.891 2.40e-164 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Car01g02578 PK_Tyr_Ser-Thr 2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02578 - - gmx:100788846 1261.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02578 01 51487497 51492197 Car01g02578 01 51487497 51492197 ECH