Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02563 ATGGAGCAATTCAAGTCGATGTTTTCACCATTTGGAGTACTTACGGAAGCTACACTTGTAATGGACCCAAAAATTAAAAGGGCCAAAGGTTTTGGTTTTGTATCTTACCGATCAGAAATTGAAGCGGAAAAGGCTATGAAATCATTAAATGGCACGATAGTTAATGGAAGGCTGATTTTCGTTGAACCTGCAAAATCAAAGGACTCGTGA 210 0.3857 MEQFKSMFSPFGVLTEATLVMDPKIKRAKGFGFVSYRSEIEAEKAMKSLNGTIVNGRLIFVEPAKSKDS 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02563 69 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 59 IPR000504 GO:0003723
Car01g02563 69 Gene3D - 1 69 IPR012677 -
Car01g02563 69 PANTHER BNAA02G06700D PROTEIN 2 67 - -
Car01g02563 69 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 66 IPR000504 GO:0003723
Car01g02563 69 SMART rrm1_1 1 62 IPR000504 GO:0003723
Car01g02563 69 SUPERFAMILY RNA-binding domain, RBD 2 68 IPR035979 GO:0003676
Car01g02563 69 PANTHER TRANSFORMER-2-RELATED 2 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02563 Car-Chr1 51368763 51370665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02563 2 68 Eukaryotic Initiation Factors Gene Family AT4G34110 35.821 6.11e-09 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02563 K13195 - gmx:100781760 95.5153