Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02558 ATGTCTCCTCATGAAGAACGCCTTGTGCTTGACCTTCAATCCAAATGGGGAAATAGGTGGTCAAGAATTGCTAGAAAGTTACCAGGAAGAACAGACAATGAGATTAAGAATTACTGGAGAACTCACATGAGGAAGAAGGCTCATGAAAAAAAGAGGGGATCAATTCCATCCACAGAACACCATTCAATGGATTCTCATGCTTCCAAAAAAGCAGGGGAAGAAAGTTTTTATGACACAGGAGGATCAAAATCAAGCCAAGTTAAAATAGTAGGAGAAGAACATGAACAAGAGTTTTCAATGGATGATATATGGAAAGATATTGATATATCAGAAGAGAATAGTTTGCAGCAGCCAGAAGAGGTGATAATTCCTCCGTCATCATGGGAGTATAATTCCTCTGACTCATTATGGGTGATGGATGAAGAAAGTATGTTATTCCCTATGAGTGATGACCCTTATTTTTCTAGATATGCTAATTAG 480 0.3812 MSPHEERLVLDLQSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAHEKKRGSIPSTEHHSMDSHASKKAGEESFYDTGGSKSSQVKIVGEEHEQEFSMDDIWKDIDISEENSLQQPEEVIIPPSSWEYNSSDSLWVMDEESMLFPMSDDPYFSRYAN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02558 159 MobiDBLite consensus disorder prediction 52 73 - -
Car01g02558 159 MobiDBLite consensus disorder prediction 40 87 - -
Car01g02558 159 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
Car01g02558 159 SUPERFAMILY Homeodomain-like 2 48 IPR009057 -
Car01g02558 159 SMART sant 1 45 IPR001005 -
Car01g02558 159 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 1 146 - -
Car01g02558 159 CDD SANT 1 43 IPR001005 -
Car01g02558 159 Pfam Myb-like DNA-binding domain 2 42 IPR001005 -
Car01g02558 159 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 146 IPR044676 GO:0003700|GO:0006355|GO:0043565
Car01g02558 159 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 47 IPR017930 -
Car01g02558 159 Gene3D - 2 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02558 Car-Chr1 51330454 51331740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02558 1 142 MYB Transcription Factor Family AT3G46130 47.619 9.62e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car01g02558 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02558 K09422 - gmx:778055 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02558 01 51330454 51331740 Car01g02558 01 51330454 51331740 ECH
Car06g03565 06 66873539 66875117 Car01g02558 01 51330454 51331740 PCT