Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02556 ATGAACTCTGCTTCATTCCATAGTCCTTTAATTTCCTACGTCGTCACAAACCCAAGGTTTAATCGCTCCTATGCTACTCGTCATAGTGCAAGATTTGGCTCGTGGAAGAACAAGGTTCGGAACTCAGCTTTTTATGCTATTGGATTTTCTGTGGTTGGAATAGAAGATGTGTTTGATGATAGTGATTTGACGAGAAATGAAAATGGATCCCTCTTAGAAGACGTTGAAATTAAGCAAGAAAATGATTTCTTTGTGAGTGATGCTGAAGGTGATCCAGATTGTCCCTCTAAAGGGTACTCTTCCATTGAGCATGCCCTTAATGCATTACGGCAAGGAAAGTTTGTAATAGCTGTAGATGATGAAAACGAGGATATTGAAGGAAATCTTATAAAGGCTGCATCTCTTATTAATACTAAAGATGTGGCCTTTATGATTAAACATGGATCAGGAATTGTGTGTGTGTGTGCGCGCGCGGCGCGCACTTGCTTGCTTTTTGTTGATGCAAAATATGGAACTTCAACTGGTGTATCAGCGGTAGATAGAGCAAAAACTATTATTGCTCTATCATCTTTGGAGTCAAAATCAGAAGATTTTAGAAAGCCTGGTCACGTTTTTCCTCTAAAATATAGAAATGGTGGGGTTCTTAGGAGAGCTGGTCATACAGAGGCTTCTGTAGATTTAGTTGCATTGGCTGGTTTGCCCTCGTTTTCTGTTCTCACAACTCTTGTTGACGTGGAAGATGGAAATATCACATCTTTACCCAATTTAAAAAGCTTAGCTTTGGAATACAACCTACCAATTGTCTCAATAACTGATTTGATAAGGTATCGAAGAAAGCGAGAGAAATTGGTTAAAAGAACTTATATCTCTCATCTTCCTACTAAATGGGGTTTATTTAAAGCATATTGTTATCGTTCAGAGTTGGATGAAACCGAGCATGTGGCTGTTGTAAAGGGAGACATAGGAGATGGGCAAGATGTTCTAGTACGAGTACATTCAGAATGTTTAACCGGTGATATATTTGGATCAGCTCGATGTGATTGTGGCAACCAACTAGATATGGCAATGCAGTTGATTGAAGAAGCTGGAAGGGGAGTAGTTGTGTATCTTAGAGGTCACGAAGGAAGAGGCATTGGGCTAGGTCACAAACTTAAAGCCTATAAGTTGCAGGATCAAGGTCGTGACACAGTCGAAGCAAACATAGAATTGGGGTTAGCTATTGATGCCCGTGAGTATGGGATTGGTGCTCAGATTTTGAGAGATATTGGAGTTCGAACTATGAGGCTGATGACCAACAATCCAGCAAAGTTCATTGGTCTTAAAGGATATGGTTTGGCTATGATAGGGCGCGTTCCTGTTCTAACACCAATCACTGAAGAAAACAAGCGCGCCCAGGGTTTCGCTCAGATTTCACATCTAGGGTCTATTTTTCTCCGCCGATCCATGGCTCCCAAAGGTGATGTTTCAAAGAAGACTGACCCAAAGGCACAGGCCTTGAAAGCTGCTAAAGCAGTTAAGTCAGGCACTGCCATTAAGAAGAAGGCAAAAAAGATCCGAACATCTGTTACATTCCATAGGCCAAAGACTTTGACAAAGGAGAGGAACCCAAAATACCCTCGTATTAGTGCTACACCAAGGAATAAGCTTGATCACTATCAGATTCTGAAATTTCCTCTCACTACTGAGTCCGCAATGAAGAAGATTGAAGACAATAACACATTGGTTTTCATTGTTGACTTGCGAGCTGACAAAAAGAAAATCAAGGACGCAGTGAAGAAAATGTATGACATCCAAGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCATATGTGAGGTTGACACCTGATTATGATGCTTTGGATGTAGCAAACAAGATTGGAATTATTTAA 1905 0.4084 MNSASFHSPLISYVVTNPRFNRSYATRHSARFGSWKNKVRNSAFYAIGFSVVGIEDVFDDSDLTRNENGSLLEDVEIKQENDFFVSDAEGDPDCPSKGYSSIEHALNALRQGKFVIAVDDENEDIEGNLIKAASLINTKDVAFMIKHGSGIVCVCARAARTCLLFVDAKYGTSTGVSAVDRAKTIIALSSLESKSEDFRKPGHVFPLKYRNGGVLRRAGHTEASVDLVALAGLPSFSVLTTLVDVEDGNITSLPNLKSLALEYNLPIVSITDLIRYRRKREKLVKRTYISHLPTKWGLFKAYCYRSELDETEHVAVVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLDMAMQLIEEAGRGVVVYLRGHEGRGIGLGHKLKAYKLQDQGRDTVEANIELGLAIDAREYGIGAQILRDIGVRTMRLMTNNPAKFIGLKGYGLAMIGRVPVLTPITEENKRAQGFAQISHLGSIFLRRSMAPKGDVSKKTDPKAQALKAAKAVKSGTAIKKKAKKIRTSVTFHRPKTLTKERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02556 634 ProSitePatterns Ribosomal protein L23 signature. 612 627 IPR001014 -
Car01g02556 634 SUPERFAMILY YrdC/RibB 98 281 IPR017945 -
Car01g02556 634 SUPERFAMILY RibA-like 282 454 IPR036144 -
Car01g02556 634 Hamap 50S ribosomal protein L23 [rplW]. 554 634 IPR013025 GO:0003735|GO:0005840|GO:0006412
Car01g02556 634 Gene3D - 515 634 IPR012677 -
Car01g02556 634 TIGRFAM ribA: GTP cyclohydrolase II 290 467 IPR000926 GO:0003935|GO:0009231
Car01g02556 634 CDD GTP_cyclohydro2 283 463 IPR000926 GO:0003935|GO:0009231
Car01g02556 634 PANTHER MONOFUNCTIONAL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA 3, CHLOROPLASTIC 159 464 - -
Car01g02556 634 PANTHER MONOFUNCTIONAL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA 3, CHLOROPLASTIC 1 156 - -
Car01g02556 634 PANTHER GTP CYCLOHYDROLASE II-RELATED 1 156 - -
Car01g02556 634 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 551 627 IPR012678 GO:0003735|GO:0005840|GO:0006412
Car01g02556 634 Pfam GTP cyclohydrolase II 290 452 IPR032677 -
Car01g02556 634 Pfam Ribosomal protein L23, N-terminal domain 495 543 IPR005633 -
Car01g02556 634 Gene3D GTP cyclohydrolase II 287 455 IPR036144 -
Car01g02556 634 Hamap GTP cyclohydrolase-2 [ribA]. 282 476 IPR000926 GO:0003935|GO:0009231
Car01g02556 634 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 164 276 IPR000422 GO:0008686|GO:0009231
Car01g02556 634 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 103 160 IPR000422 GO:0008686|GO:0009231
Car01g02556 634 PANTHER GTP CYCLOHYDROLASE II-RELATED 159 464 - -
Car01g02556 634 Pfam Ribosomal protein L23 554 615 IPR013025 GO:0003735|GO:0005840|GO:0006412
Car01g02556 634 Gene3D DHBP synthase 93 160 - -
Car01g02556 634 Gene3D DHBP synthase 161 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02556 Car-Chr1 51308151 51316596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02556 517 634 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 93.220 1.33e-63 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02556 K14652 - gmx:100786573 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02556 01 51308151 51316596 Car01g02556 01 51308151 51316596 ECH
Car06g03561 06 66842809 66844799 Car01g02556 01 51308151 51316596 ECH
Car01g02556 01 51308151 51316596 Car06g03561 06 66842809 66844799 PCT